8ZW3 | pdb_00008zw3

Solution structure of TMPRSS2 promoter G-quadruplex

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	1.93 mM None BER-TMPRSS2_Pu23m3	90% H2O/10% D2O	10 mM	7.0	1 atm	288	Bruker AVANCE II 600
2	2D 1H-1H NOESY	1.93 mM None BER-TMPRSS2_Pu23m3	90% H2O/10% D2O	10 mM	7.0	1 atm	298	Bruker AVANCE II 600
3	2D 1H-1H NOESY	1.93 mM None BER-TMPRSS2_Pu23m3	90% H2O/10% D2O	10 mM	7.0	1 atm	308	Bruker AVANCE II 600
4	2D 1H-13C HSQC	1.93 mM None BER-TMPRSS2_Pu23m3	90% H2O/10% D2O	10 mM	7.0	1 atm	298	Bruker AVANCE II 600
5	2D 1H-13C HSQC	1.93 mM None BER-TMPRSS2_Pu23m3	90% H2O/10% D2O	10 mM	7.0	1 atm	308	Bruker AVANCE II 600
6	2D DQF-COSY	1.93 mM None BER-TMPRSS2_Pu23m3	90% H2O/10% D2O	10 mM	7.0	1 atm	308	Bruker AVANCE II 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE II	600

NMR Refinement
Method	Details	Software
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure calculation	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2	collection	TopSpin		Bruker Biospin
3	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	peak picking	NMRFAM-SPARKY		Woonghee Lee