9D9F | pdb_00009d9f

Candida albicans Hsp90 nucleotide binding domain in complex with BRI2311

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6CJR

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	18% PEG8000, 0.1M Cacodylates pH 6.5, 0.2 M MgAcetate, 20% glycerol

Crystal Properties
Matthews coefficient	Solvent content
2.98	58.72

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 73.874	α = 90
b = 73.874	β = 90
c = 108.817	γ = 90

Symmetry
Space Group	P 43 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER R 1M		2021-05-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SEALED TUBE	RIGAKU MICROMAX-003	1.54189

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.75	30.56	99.9	0.059	0.061	0.017	1	31	12.7		31120

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.75	1.78		99.4	1.145	1.317	0.635	0.546		4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.78	30.56	29601	1480	99.936	0.176	0.1752	0.1752	0.1985	0.1985	25.622

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.642			-0.642		1.284

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.132
r_dihedral_angle_3_deg	11.88
r_lrange_it	7.981
r_lrange_other	7.647
r_dihedral_angle_1_deg	7.597
r_dihedral_angle_2_deg	5.481
r_scangle_it	5.427
r_scangle_other	5.425
r_mcangle_it	4.657
r_mcangle_other	4.655
r_scbond_it	3.515
r_scbond_other	3.507
r_mcbond_it	2.941
r_mcbond_other	2.941
r_angle_refined_deg	2.247
r_angle_other_deg	1.294
r_nbd_refined	0.17
r_nbtor_refined	0.142
r_symmetry_nbd_other	0.119
r_chiral_restr	0.115
r_xyhbond_nbd_refined	0.099
r_nbd_other	0.069
r_symmetry_nbtor_other	0.061
r_symmetry_xyhbond_nbd_refined	0.051
r_symmetry_nbd_refined	0.047
r_bond_refined_d	0.013
r_gen_planes_refined	0.013
r_bond_other_d	0.008
r_gen_planes_other	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1695
Nucleic Acid Atoms
Solvent Atoms	283
Heterogen Atoms	53

Software

Software
Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
CrysalisPro	data reduction
PHASER	phasing