4U3

5-chloro-2'-deoxycytidine 5'-(dihydrogen phosphate)

Created:2015-05-27
Last modified:  2020-06-05

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Chemical Details

Formal Charge0
Atom Count34
Chiral Atom Count3
Bond Count35
Aromatic Bond Count0
2D diagram of 4U3

Chemical Component Summary

Name5-chloro-2'-deoxycytidine 5'-(dihydrogen phosphate)
Synonyms5-Chloro-5'-deoxycytidine
Systematic Name (OpenEye OEToolkits)[(2R,3S,5R)-5-(4-azanyl-5-chloranyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
FormulaC9 H13 Cl N3 O7 P
Molecular Weight341.642
TypeDNA LINKING

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01C1(N=C(N)C(Cl)=CN1C2OC(COP(=O)(O)O)C(O)C2)=O
SMILESCACTVS3.385NC1=NC(=O)N(C=C1Cl)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
SMILESOpenEye OEToolkits1.9.2C1C(C(OC1N2C=C(C(=NC2=O)N)Cl)COP(=O)(O)O)O
Canonical SMILESCACTVS3.385 NC1=NC(=O)N(C=C1Cl)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
Canonical SMILESOpenEye OEToolkits1.9.2 C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)Cl)COP(=O)(O)O)O
InChIInChI1.03 InChI=1S/C9H13ClN3O7P/c10-4-2-13(9(15)12-8(4)11)7-1-5(14)6(20-7)3-19-21(16,17)18/h2,5-7,14H,1,3H2,(H2,11,12,15)(H2,16,17,18)/t5-,6+,7+/m0/s1
InChIKeyInChI1.03 JXVVNBLPBHXIAA-RRKCRQDMSA-N

Related Resource References

Resource NameReference
PubChem 18637363