Rotate Hydrogens Labels

5CM

5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE

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5CM is present as a standalone ligand

5CM as a non-polymer is covalently linked to polymer or other heterogen groups

5CM is present in a polymer sequence

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View summary at Ligand Expo

Chemical Component Summary
Name	5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Identifiers	[(2R,3S,5R)-5-(4-amino-5-methyl-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
Formula	C₁₀ H₁₆ N₃ O₇ P
Molecular Weight	321.22
Type	DNA LINKING
Isomeric SMILES	CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1N
InChI	InChI=1S/C10H16N3O7P/c1-5-3-13(10(15)12-9(5)11)8-2-6(14)7(20-8)4-19-21(16,17)18/h3,6-8,14H,2,4H2,1H3,(H2,11,12,15)(H2,16,17,18)/t6-,7+,8+/m0/s1
InChIKey	RGDVNLHBCKWZDA-XLPZGREQSA-N

Chemical Details
Formal Charge	0
Atom Count	37
Chiral Atom Count	3
Bond Count	38
Aromatic Bond Count	0

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.