RotateHydrogensLabels

5CM

5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE

5CM in polymers: 188 entries. Examples include: 6MG2 6ALS 270D

5CM as a free ligand exists in 1 entry. Examples include: 6SQW

Find related ligands: Stereoisomers Similar ligands Chemical Structure Search

View summary at Ligand Expo



Chemical Component Summary

Name5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Identifiers[(2R,3S,5R)-5-(4-amino-5-methyl-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
FormulaC10 H16 N3 O7 P
Molecular Weight321.22
TypeDNA LINKING
Isomeric SMILESCc1cn([C@H]2C[C@H](O)[C@@H](COP(O)(O)=O)O2)c(=O)nc1N
InChIInChI=1S/C10H16N3O7P/c1-5-3-13(10(15)12-9(5)11)8-2-6(14)7(20-8)4-19-21(16,17)18/h3,6-8,14H,2,4H2,1H3,(H2,11,12,15)(H2,16,17,18)/t6-,7+,8+/m0/s1
InChIKeyRGDVNLHBCKWZDA-XLPZGREQSA-N

Chemical Details

Formal Charge0
Atom Count37
Chiral Atom Count3
Chiral AtomsC1', C3', C4'
Bond Count38
Aromatic Bond Count0
Leaving AtomsOP3, HO3'