Rotate Hydrogens Labels

5SE

2'-deoxy-5-(methylselanyl)cytidine 5'-(dihydrogen phosphate)

Find entries where 5SE is present as a standalone ligand

Find entries where 5SE as a non-polymer is covalently linked to polymer or other heterogen groups

Find entries where 5SE is present in a polymer sequence

Find related ligands: Stereoisomers Similar ligands Chemical Structure Search

View summary at Ligand Expo

Chemical Component Summary
Name	2'-deoxy-5-(methylselanyl)cytidine 5'-(dihydrogen phosphate)
Identifiers	[(2R,3S,5R)-5-(4-azanyl-5-methylselanyl-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
Formula	C₁₀ H₁₆ N₃ O₇ P Se
Molecular Weight	400.18
Type	DNA LINKING
Isomeric SMILES	C[Se]C1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1N
InChI	InChI=1S/C10H16N3O7PSe/c1-22-7-3-13(10(15)12-9(7)11)8-2-5(14)6(20-8)4-19-21(16,17)18/h3,5-6,8,14H,2,4H2,1H3,(H2,11,12,15)(H2,16,17,18)/t5-,6+,8+/m0/s1
InChIKey	NLUQHLNACKOXLS-SHYZEUOFSA-N

Chemical Details
Formal Charge	0
Atom Count	38
Chiral Atom Count	3
Bond Count	39
Aromatic Bond Count	0

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.