C5L

2'-O-(2-methoxyethyl)-5-methylcytidine 5'-(dihydrogen phosphate)

Created:2013-01-22
Last modified:  2013-11-27

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Chemical Details

Formal Charge0
Atom Count48
Chiral Atom Count4
Bond Count49
Aromatic Bond Count0
2D diagram of C5L
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Chemical Component Summary

Name2'-O-(2-methoxyethyl)-5-methylcytidine 5'-(dihydrogen phosphate)
Systematic Name (OpenEye OEToolkits)[(2R,3R,4R,5R)-5-(4-azanyl-5-methyl-2-oxidanylidene-pyrimidin-1-yl)-4-(2-methoxyethoxy)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
FormulaC13 H22 N3 O9 P
Molecular Weight395.302
TypeRNA LINKING

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C(=C1)C)C(OCCOC)C2O
SMILESCACTVS3.370COCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=NC2=O)N
SMILESOpenEye OEToolkits1.7.6CC1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)OCCOC
Canonical SMILESCACTVS3.370 COCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=NC2=O)N
Canonical SMILESOpenEye OEToolkits1.7.6 CC1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCCOC
InChIInChI1.03 InChI=1S/C13H22N3O9P/c1-7-5-16(13(18)15-11(7)14)12-10(23-4-3-22-2)9(17)8(25-12)6-24-26(19,20)21/h5,8-10,12,17H,3-4,6H2,1-2H3,(H2,14,15,18)(H2,19,20,21)/t8-,9-,10-,12-/m1/s1
InChIKeyInChI1.03 RRWZBUGVTSQGAI-DNRKLUKYSA-N

Related Resource References

Resource NameReference
PubChem 122480576