Rotate Hydrogens Labels

N5M

5-nitrocytidine 5'-(dihydrogen phosphate)

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N5M is present as a standalone ligand

N5M as a non-polymer is covalently linked to polymer or other heterogen groups

N5M is present in a polymer sequence

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View summary at Ligand Expo

Chemical Component Summary
Name	5-nitrocytidine 5'-(dihydrogen phosphate)
Identifiers	[(2R,3S,4R,5R)-5-(4-amino-5-nitro-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate
Formula	C₉ H₁₃ N₄ O₁₀ P
Molecular Weight	368.19
Type	RNA LINKING
Isomeric SMILES	NC1=NC(=O)N(C=C1[N+]([O-])=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
InChI	InChI=1S/C9H13N4O10P/c10-7-3(13(17)18)1-12(9(16)11-7)8-6(15)5(14)4(23-8)2-22-24(19,20)21/h1,4-6,8,14-15H,2H2,(H2,10,11,16)(H2,19,20,21)/t4-,5-,6-,8-/m1/s1
InChIKey	QPCLJXMRTPOKPG-UAKXSSHOSA-N

Chemical Details
Formal Charge	0
Atom Count	37
Chiral Atom Count	4
Bond Count	38
Aromatic Bond Count	0

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.