OGX

2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}-8-oxoguanosine

Created:	2009-09-10
Last modified:	2024-09-27

Find Related PDB Entry
1 entries where OGX is found in a polymer sequence

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	46
Chiral Atom Count	3
Bond Count	48
Aromatic Bond Count	0

2D diagram of OGX

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}-8-oxoguanosine
Systematic Name (OpenEye OEToolkits)	[(2R,3S,5R)-5-(2-azanyl-6,8-dioxo-1,7-dihydropurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-N-(2-sulfanylethyl)phosphonamidic acid
Formula	C₁₂ H₁₉ N₆ O₇ P S
Molecular Weight	422.354
Type	DNA LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	11.02	O=P(O)(OCC3OC(N2C(=O)NC1=C2N=C(N)NC1=O)CC3O)NCCS
SMILES	CACTVS	3.352	NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(=O)NCCS)O3)C(=O)N1
SMILES	OpenEye OEToolkits	1.7.0	C1C(C(OC1N2C3=C(C(=O)NC(=N3)N)NC2=O)COP(=O)(NCCS)O)O
Canonical SMILES	CACTVS	3.352	NC1=NC2=C(NC(=O)N2[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)NCCS)O3)C(=O)N1
Canonical SMILES	OpenEye OEToolkits	1.7.0	C1[C@@H]([C@H](O[C@H]1N2C3=C(C(=O)NC(=N3)N)NC2=O)CO[P@](=O)(NCCS)O)O
InChI	InChI	1.03	InChI=1S/C12H19N6O7PS/c13-11-16-9-8(10(20)17-11)15-12(21)18(9)7-3-5(19)6(25-7)4-24-26(22,23)14-1-2-27/h5-7,19,27H,1-4H2,(H,15,21)(H2,14,22,23)(H3,13,16,17,20)/t5-,6+,7+/m0/s1
InChIKey	InChI	1.03	QTNBODRGZGXUEH-RRKCRQDMSA-N

Related Resource References

Resource Name	Reference
PubChem	137349836, 49867435

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.