RPC

cytidine 3',5'-bis(dihydrogen phosphate)

Created:	2012-12-11
Last modified:	2013-04-24

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1 entries where RPC is found in a polymer sequence

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Chemical Details
Formal Charge	0
Atom Count	40
Chiral Atom Count	4
Bond Count	41
Aromatic Bond Count	0

2D diagram of RPC

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Chemical Component Summary
Name	cytidine 3',5'-bis(dihydrogen phosphate)
Systematic Name (OpenEye OEToolkits)	[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate
Formula	C₉ H₁₅ N₃ O₁₁ P₂
Molecular Weight	403.176
Type	RNA LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(O)C2OP(=O)(O)O
SMILES	CACTVS	3.370	NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]2O
SMILES	OpenEye OEToolkits	1.7.6	C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)OP(=O)(O)O)O
Canonical SMILES	CACTVS	3.370	NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]2O
Canonical SMILES	OpenEye OEToolkits	1.7.6	C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)OP(=O)(O)O)O
InChI	InChI	1.03	InChI=1S/C9H15N3O11P2/c10-5-1-2-12(9(14)11-5)8-6(13)7(23-25(18,19)20)4(22-8)3-21-24(15,16)17/h1-2,4,6-8,13H,3H2,(H2,10,11,14)(H2,15,16,17)(H2,18,19,20)/t4-,6-,7-,8-/m1/s1
InChIKey	InChI	1.03	MVGIITUCOOTSAP-XVFCMESISA-N

Related Resource References

Resource Name	Reference
PubChem	3081380

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.