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244,290
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

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QUERY: Common Name (Entity Source Organism) = "BAKER'S YEAST"

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Search Summary

This query matches 7,815 Polymer Entities.

Refinements

Structure Determination Methodology

	experimental (7,807)
	integrative (8)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (4,174)
	Saccharomyces cerevisiae S288C (3,488)
	Homo sapiens (88)
	Saccharomyces cerevisiae YJM789 (59)
	Saccharomyces cerevisiae RM11-1a (51)
	Escherichia coli K-12 (16)
	Mus musculus (16)
	Saccharomyces cerevisiae W303 (15)
	Saccharomyces cerevisiae CEN.PK113-7D (14)
	Tequatrovirus T4 (8)

More...

Taxonomy

	Eukaryota (7,815)
	Bacteria (48)
	Duplodnaviria (10)
	Riboviria (9)
	other sequences (3)
	Archaea (1)
	Monodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (4,538)
	ELECTRON MICROSCOPY (2,897)
	SOLUTION NMR (368)
	SOLUTION SCATTERING (5)
	ELECTRON CRYSTALLOGRAPHY (4)
	NEUTRON DIFFRACTION (2)

Integrative Input Data

	Crosslinking-MS data (8)
	Experimental model (8)

Polymer Entity Type

	Protein (7,666)
	DNA (91)
	RNA (58)

Refinement Resolution (Å)

	0.5 - 1.0 (4)
	1.0 - 1.5 (197)
	1.5 - 2.0 (1,061)
	2.0 - 2.5 (1,232)
	2.5 - 3.0 (1,465)
	3.0 - 3.5 (1,335)
	3.5 - 4.0 (980)
	4.0 - 4.5 (435)
	> 4.5 (731)

Release Date

	1975 - 1979 (1)
	1980 - 1984 (4)
	1985 - 1989 (1)
	1990 - 1994 (69)
	1995 - 1999 (175)
	2000 - 2004 (525)
	2005 - 2009 (801)
	2010 - 2014 (969)
	2015 - 2019 (2,588)
	2020 - 2024 (2,600)

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Enzyme Classification Name

	Hydrolases (1,222)
	Transferases (734)
	Oxidoreductases (452)
	Ligases (122)
	Isomerases (114)
	Lyases (90)
	Translocases (54)

Membrane Protein Annotation

	PDBTM (283)
	mpstruc (234)
	OPM (218)
	MemProtMD (209)

Symmetry Type

	Asymmetric (6,098)
	Cyclic (1,699)
	Dihedral (182)
	Helical (27)
	Octahedral (6)
	Tetrahedral (3)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (811)
	Alpha and beta proteins (a/b) (568)
	All alpha proteins (692)
	Artifacts (447)
	All beta proteins (441)
	Coiled coil proteins (71)
	Small proteins (45)
	Multi-domain proteins (alpha and beta) (23)
	Membrane and cell surface proteins and peptides (20)
	Low resolution protein structures (9)

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AllSelected

1 to 25 of 7,815 Polymer Entities

Page 1 of 313

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Explore in 3D

117E: Entity 1	Download File View File

THE R78K AND D117E ACTIVE SITE VARIANTS OF SACCHAROMYCES CEREVISIAE SOLUBLE INORGANIC PYROPHOSPHATASE: STRUCTURAL STUDIES AND MECHANISTIC IMPLICATIONS

Tuominen, V., Heikinheimo, P., Kajander, T., Torkkel, T., Hyytia, T., Kapyla, J., Lahti, R., Cooperman, B.S., Goldman, A.

(1998) J Mol Biology 284: 1565-1580

Released	1998-12-23
Method	X-RAY DIFFRACTION 2.15 Å
Chain IDs	A, B
Organism	Saccharomyces cerevisiae
Macromolecule	PROTEIN (INORGANIC PYROPHOSPHATASE)

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1A0A: Entity 3	Download File View File

PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX

Shimizu, T., Toumoto, A., Ihara, K., Shimizu, M., Kyogoku, Y., Ogawa, N., Oshima, Y., Hakoshima, T.

(1997) EMBO J 16: 4689-4697

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	C [auth A], D [auth B]
Organism	Saccharomyces cerevisiae
Macromolecule	PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4)

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1A1D: Entity 1	Download File View File

YEAST RNA POLYMERASE SUBUNIT RPB8, NMR, MINIMIZED AVERAGE STRUCTURE, ALPHA CARBONS ONLY

Krapp, S., Kelly, G., Reischl, J., Weinzierl, R., Matthews, S.

(1998) Nat Struct Biol 5: 110-114

Released	1999-03-02
Method	SOLUTION NMR
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	RNA POLYMERASE

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1A2F: Entity 1	Download File View File

PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES

Cao, Y., Goodin, D.B., Mcree, D.E.

To be published

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1A2G: Entity 1	Download File View File

PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES

Cao, Y., Goodin, D.B., Mcree, D.E.

To be published

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1A6R: Entity 1	Download File View File

GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A

Joshua-Tor, L., Zheng, W., Johnston, S.A.

(1998) Cell 93: 103-109

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.05 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	GAL6

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1AA4: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING IN A BURIED POLAR CAVITY OF CYTOCHROME C PEROXIDASE

Musah, R.A., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(1996) Nat Struct Biol 3: 626-631

Released	1997-07-23
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1AC4: Entity 1	Download File View File

VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (2,3,4-TRIMETHYL-1,3-THIAZOLE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(1997) J Am Chem Soc 119: 626-631

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1AC8: Entity 1	Download File View File

VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (3,4,5-TRIMETHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(1997) J Am Chem Soc 119: 626-631

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1AEB: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3-METHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1AED: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3,4-DIMETHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1AEE: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (ANILINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AEF: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3-AMINOPYRIDINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1AEG: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (4-AMINOPYRIDINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AEH: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (2-AMINO-4-METHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AEJ: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (1-VINYLIMIDAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1AEK: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (INDOLINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

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1AEM: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (IMIDAZO[1,2-A]PYRIDINE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AEN: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (2-AMINO-5-METHYLTHIAZOLE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AEO: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (2-AMINOPYRIDINE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AEQ: Entity 1	Download File View File

VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (2-ETHYLIMIDAZOLE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(2002) J Mol Biology 315: 845-857

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AES: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (IMIDAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(1996) Nat Struct Biol 3: 626-631

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AET: Entity 1	Download File View File

VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (1-METHYLIMIDAZOLE)

Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R., Mcree, D.E., Goodin, D.B.

(1996) Nat Struct Biol 3: 626-631

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AEU: Entity 1	Download File View File

SPECIFICITY OF LIGAND BINDING IN A POLAR CAVITY OF CYTOCHROME C PEROXIDASE (2-METHYLIMIDAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(1996) Nat Struct Biol 3: 626-631

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

Explore in 3D

1AEV: Entity 1	Download File View File

INTRODUCTION OF NOVEL SUBSTRATE OXIDATION INTO CYTOCHROME C PEROXIDASE BY CAVITY COMPLEMENTATION: OXIDATION OF 2-AMINOTHIAZOLE AND COVALENT MODIFICATION OF THE ENZYME (2-AMINOTHIAZOLE)

Musah, R.A., Fitzgerald, M.M., Jensen, G.M., Mcree, D.E., Goodin, D.B.

(1997) Biochemistry 36: 11665-11674

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE

1 to 25 of 7,815 Polymer Entities

Page 1 of 313

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Structure Determination Methodology

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Integrative Input Data

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