RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

240,665
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Comamonas testosteroni"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 87 Structures.

Refinements

Structure Determination Methodology

experimental (87)

Scientific Name of Source Organism

	Comamonas testosteroni (49)
	Comamonas testosteroni KF-1 (28)
	Comamonas testosteroni CNB-1 (5)
	Comamonas testosteroni CNB-2 (4)
	[Pseudomonas] dacunhae ATCC 21192 (1)

Taxonomy

Bacteria (87)

Experimental Method

	X-RAY DIFFRACTION (75)
	ELECTRON MICROSCOPY (10)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (77)
	RNA (10)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (23)
	2.0 - 2.5 (24)
	2.5 - 3.0 (28)
	3.0 - 3.5 (7)
	> 4.5 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (6)
	2005 - 2009 (5)
	2010 - 2014 (29)
	2015 - 2019 (8)
	2020 - 2024 (23)
	2025 - 2029 (12)

Enzyme Classification Name

	Oxidoreductases (24)
	Isomerases (26)
	Lyases (6)
	Transferases (1)

Symmetry Type

	Cyclic (59)
	Asymmetric (10)
	Dihedral (9)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (26)
	All beta proteins (7)
	Alpha and beta proteins (a/b) (6)
	All alpha proteins (1)

AllSelected

1 to 25 of 87 Structures

Page 1 of 4

Sort by

Explore in 3D

1BUQ \| pdb_00001buq	Download File View File

SOLUTION STRUCTURE OF DELTA-5-3-KETOSTEROID ISOMERASE COMPLEXED WITH THE STEROID 19-NORTESTOSTERONE-HEMISUCCINATE

Massiah, M.A., Abeygunawardana, C., Gittis, A.G., Mildvan, A.S.

(1998) Biochemistry 37: 14701-14712

Released	1999-01-20
Method	SOLUTION NMR
Organisms	Comamonas testosteroni
Macromolecule	PROTEIN (3-KETOSTEROID ISOMERASE-19-NORTESTOSTERONE-HEMISUCCINATE) (protein)
Unique Ligands	NTH

Explore in 3D

1FJH \| pdb_00001fjh	Download File View File

THE CRYSTAL STRUCTURE OF 3-ALPHA-HYDROXYSTEROID DEHYDROGENASE FROM COMAMONAS TESTOSTERONI, A MEMBER OF THE SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY

Grimm, C., Ficner, R., Maser, E., Klebe, G., Reuter, K.

(2000) J Biological Chem 275: 41333-41339

Released	2001-01-17
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Comamonas testosteroni
Macromolecule	3ALPHA-HYDROXYSTEROID DEHYDROGENASE/CARBONYL REDUCTASE (protein)

Explore in 3D

1FK8 \| pdb_00001fk8	Download File View File

THE CRYSTAL STRUCTURE OF THE BINARY COMPLEX WITH NAD OF 3-ALPHA-HYDROXYSTEROID DEHYDROGENASE FROM COMAMONAS TESTOSTERONI, A MEMBER OF THE SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY

Grimm, C., Ficner, R., Maser, E., Klebe, G., Reuter, K.

(2000) J Biological Chem 275: 41333-41339

Released	2001-01-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Comamonas testosteroni
Macromolecule	3ALPHA-HYDROXYSTEROID DEHYDROGENASE/CARBONYL REDUCTASE (protein)
Unique Ligands	NAD

Explore in 3D

1HXH \| pdb_00001hxh	Download File View File

COMAMONAS TESTOSTERONI 3BETA/17BETA HYDROXYSTEROID DEHYDROGENASE

Benach, J., Filling, C., Oppermann, U.C.T., Roversi, P., Bricogne, G., Berndt, K.D., Jornvall, H., Ladenstein, R.

(2002) Biochemistry 41: 14659-14668

Released	2002-12-25
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Comamonas testosteroni
Macromolecule	3BETA/17BETA-HYDROXYSTEROID DEHYDROGENASE (protein)

Explore in 3D

1ISK \| pdb_00001isk	Download File View File

3-OXO-DELTA5-STEROID ISOMERASE, NMR, 20 STRUCTURES

Wu, Z.R., Ebrahimian, S., Zawrotny, M.E., Thornburg, L.D., Perez-Alvarado, G.C., Brothers, P., Pollack, R.M., Summers, M.F.

(1997) Science 276: 415-418

Released	1997-11-12
Method	SOLUTION NMR
Organisms	Comamonas testosteroni
Macromolecule	3-OXO-DELTA5-STEROID ISOMERASE (protein)

Explore in 3D

1KB0 \| pdb_00001kb0	Download File View File

Crystal Structure of Quinohemoprotein Alcohol Dehydrogenase from Comamonas testosteroni

Rozeboom, H.J., Oubrie, A.

(2002) J Biological Chem 277: 3727-3732

Released	2001-12-28
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Comamonas testosteroni
Macromolecule	quinohemoprotein alcohol dehydrogenase (protein)
Unique Ligands	CA, GOL, HEC, PQQ, TFB

Explore in 3D

1OCV \| pdb_00001ocv	Download File View File

the F116W mutant structure of ketosteroid isomerase from Comamonas testosteroni

Yun, Y.S., Lee, T.-H., Shin, S.

(2003) J Biological Chem 278: 28229

Released	2003-07-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Comamonas testosteroni
Macromolecule	STEROID DELTA-ISOMERASE (protein)

Explore in 3D

1OGZ \| pdb_00001ogz	Download File View File

Crystal Structure Of 5-3-Ketosteroid Isomerase Mutants P39A Complexed With Equilenin From Pseudomonas Testosteroni

Nam, G.H., Cha, S.-S., Yun, Y.S., Oh, Y.H., Hong, B.H., Lee, H.-S., Choi, K.Y.

(2003) Biochem J 375: 297

Released	2003-09-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Comamonas testosteroni
Macromolecule	STEROID DELTA-ISOMERASE (protein)
Unique Ligands	EQU

Explore in 3D

1OHP \| pdb_00001ohp	Download File View File

CRYSTAL STRUCTURE OF 5-3-KETOSTEROID ISOMERASE MUTANT D38N FROM PSEUDOMONAS TESTOSTERONI COMPLEXED WITH 5ALPHA-ESTRAN-3,17-DIONE

Byun, M., Kim, M.-S., Oh, B.-H.

To be published

Released	2005-03-31
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Comamonas testosteroni
Macromolecule	STEROID DELTA-ISOMERASE (protein)
Unique Ligands	ESR

Explore in 3D

1OHS \| pdb_00001ohs	Download File View File

CRYSTAL STRUCTURE OF 5-3-KETOSTEROID ISOMERASE MUTANT Y14F/D38N FROM PSEUDOMONAS TESTOSTERONI COMPLEXED WITH ANDROSTANEDIONE

Byun, M., Kim, M.-S., Oh, B.-H.

To be published

Released	2005-03-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Comamonas testosteroni
Macromolecule	STEROID DELTA-ISOMERASE (protein)
Unique Ligands	5SD

Explore in 3D

1QJG \| pdb_00001qjg	Download File View File

Crystal structure of delta5-3-ketosteroid isomerase from Pseudomonas testosteroni in complex with equilenin

Cho, H.-S., Oh, B.-H.

(1999) J Biological Chem 274: 32863

Released	1999-11-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Comamonas testosteroni
Macromolecule	KETOSTEROID ISOMERASE (protein)
Unique Ligands	EQU, SO4

Explore in 3D

2DKH \| pdb_00002dkh	Download File View File

Crystal structure of 3-hydroxybenzoate hydroxylase from Comamonas testosteroni, in complex with the substrate

Hiromoto, T., Fujiwara, S., Hosokawa, K., Yamaguchi, H.

(2006) J Mol Biology 364: 878-896

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Comamonas testosteroni
Macromolecule	3-hydroxybenzoate hydroxylase (protein)
Unique Ligands	3HB, FAD, SO4

Explore in 3D

2DKI \| pdb_00002dki	Download File View File

Crystal structure of 3-hydroxybenzoate hydroxylase from Comamonas testosteroni, under pressure of xenon gas (12 atm)

Hiromoto, T., Fujiwara, S., Hosokawa, K., Yamaguchi, H.

(2006) J Mol Biology 364: 878-896

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Comamonas testosteroni
Macromolecule	3-HYDROXYBENZOATE HYDROXYLASE (protein)
Unique Ligands	FAD, SO4, XE

Explore in 3D

2Y93 \| pdb_00002y93	Download File View File

Crystal Structure of cis-Biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)from Pandoraea pnomenusa strain B-356.

Dhindwal, S., Patil, D.N., Kumar, P.

(2011) J Biological Chem 286: 37011

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Comamonas testosteroni
Macromolecule	CIS-2,3-DIHYDROBIPHENYL-2,3-DIOL DEHYDROGENASE (protein)

Explore in 3D

2Y99 \| pdb_00002y99	Download File View File

Crystal Structure of cis-Biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)from Pandoraea pnomenusa strain B-356 complex with co-enzyme NAD

Dhindwal, S., Patil, D.N., Kumar, P.

(2011) J Biological Chem 286: 37011

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Comamonas testosteroni
Macromolecule	CIS-2,3-DIHYDROBIPHENYL-2,3-DIOL DEHYDROGENASE (protein)
Unique Ligands	NAD

Explore in 3D

3FDD \| pdb_00003fdd	Download File View File

The Crystal Structure of the Pseudomonas dacunhae Aspartate-Beta-Decarboxylase Reveals a Novel Oligomeric Assembly for a Pyridoxal-5-Phosphate Dependent Enzyme

Lima, S., Sundararaju, B., Huang, C., Khristoforov, R., Momany, C., Phillips, R.S.

(2009) J Mol Biology 388: 98-108

Released	2009-03-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	[Pseudomonas] dacunhae ATCC 21192
Macromolecule	L-aspartate-beta-decarboxylase (protein)
Unique Ligands	ACT, CL, PLP

Explore in 3D

3FXQ \| pdb_00003fxq	Download File View File

Crystal structure of the LysR-type transcriptional regulator TsaR

Monferrer, D., Tralau, T., Kertesz, M.A., Kikhney, A., Svergun, D., Uson, I.

(2010) Mol Microbiol 75: 1199-1214

Released	2010-01-26
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Comamonas testosteroni
Macromolecule	LysR type regulator of tsaMBCD (protein)
Unique Ligands	BME, CL, FMT, GOL

Explore in 3D

3FXR \| pdb_00003fxr	Download File View File

Crystal structure of TsaR in complex with sulfate

Monferrer, D., Tralau, T., Kertesz, M.A., Kikhney, A., Svergun, D., Uson, I.

(2010) Mol Microbiol 75: 1199-1214

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Comamonas testosteroni
Macromolecule	LysR type regulator of tsaMBCD (protein)
Unique Ligands	ASC, GOL, SO4

Explore in 3D

3FXU \| pdb_00003fxu	Download File View File

Crystal structure of TsaR in complex with its effector p-toluenesulfonate

Monferrer, D., Tralau, T., Kertesz, M.A., Kikhney, A., Svergun, D., Uson, I.

(2010) Mol Microbiol 75: 1199-1214

Released	2010-01-26
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Comamonas testosteroni
Macromolecule	LysR type regulator of tsaMBCD (protein)
Unique Ligands	CL, FMT, GOL, IMD, TSU

Explore in 3D

3FZJ \| pdb_00003fzj	Download File View File

TsaR low resolution crystal structure, tetragonal form

Monferrer, D., Tralau, T., Kertesz, M.A., Dix, I., Kikhney, A.G., Svergun, D.I., Uson, I.

(2010) Mol Microbiol 75: 1199-1214

Released	2010-01-26
Method	X-RAY DIFFRACTION 7.1 Å
Organisms	Comamonas testosteroni
Macromolecule	LysR type regulator of tsaMBCD (protein)

Explore in 3D

3GZX \| pdb_00003gzx	Download File View File

Crystal Structure of the Biphenyl Dioxygenase in complex with Biphenyl from Comamonas testosteroni Sp. Strain B-356

Kumar, P., Colbert, C.L., Bolin, J.T.

(2013) PLoS One 8: e52550-e52550

Released	2010-05-05
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Comamonas testosteroni
Macromolecule	Biphenyl dioxygenase subunit alpha (protein) Biphenyl dioxygenase subunit beta (protein)
Unique Ligands	BNL, FE2, FES, GOL, MES

Explore in 3D

3GZY \| pdb_00003gzy	Download File View File

Crystal Structure of the Biphenyl Dioxygenase from Comamonas testosteroni Sp. Strain B-356

Kumar, P., Colbert, C.L., Bolin, J.T.

(2013) PLoS One 8: e52550-e52550

Released	2010-05-05
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Comamonas testosteroni
Macromolecule	Biphenyl dioxygenase subunit alpha (protein) Biphenyl dioxygenase subunit beta (protein)
Unique Ligands	FE2, FES, MES

Explore in 3D

3M8C \| pdb_00003m8c	Download File View File

Crystal Structure of Ketosteroid Isomerase D99N from Pseudomonas Testosteroni (tKSI) with Equilenin Bound

Gonzalez, A., Tsai, Y., Schwans, J., Sunden, F., Herschlag, D.

To be published

Released	2010-04-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Comamonas testosteroni
Macromolecule	Steroid Delta-isomerase (protein)
Unique Ligands	EQU, GOL, SO4