RCSB PDB: Search

1AAF \| pdb_00001aaf	Download File View File

NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1

Summers, M.F., Henderson, L.E., Chance, M.R., Bess Junior, J.W., South, T.L., Blake, P.R., Sagi, I., Perez-Alvarado, G., Sowder, R.C., Hare, D.R., Arthur, L.O.

(1992) Protein Sci 1: 563-574

Released	1994-01-31
Method	SOLUTION NMR
Organisms	HIV-1 M:B_MN
Macromolecule	HIV-1 NUCLEOCAPSID PROTEIN (protein)
Unique Ligands	ZN

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1ACY \| pdb_00001acy	Download File View File

CRYSTAL STRUCTURE OF THE PRINCIPAL NEUTRALIZING SITE OF HIV-1

Ghiara, J.B., Wilson, I.A.

(1994) Science 264: 82-85

Released	1994-07-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	HIV-1 M:B_MN Mus musculus
Macromolecule	HIV-1 GP120 (MN ISOLATE) (protein) IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) (protein)

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1AI1 \| pdb_00001ai1	Download File View File

HIV-1 V3 LOOP MIMIC

Ghiara, J.B., Wilson, I.A.

(1997) J Mol Biology 266: 31-39

Released	1997-05-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate MN) Mus musculus
Macromolecule	AIB142 (protein) IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) (protein)

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1F58 \| pdb_00001f58	Download File View File

IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 24-RESIDUE PEPTIDE (RESIDUES 308-333 OF HIV-1 GP120 (MN ISOLATE) WITH ALA TO AIB SUBSTITUTION AT POSITION 323

Stanfield, R.L., Cabezas, E., Satterthwait, A.C., Stura, E.A., Profy, A.T., Wilson, I.A.

(1999) Structure 7: 131-142

Released	1999-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_MN Mus musculus
Macromolecule	Envelope glycoprotein gp120 (protein) PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) (protein) PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) (protein)

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1GGI \| pdb_00001ggi	Download File View File

CRYSTAL STRUCTURE OF AN HIV-1 NEUTRALIZING ANTIBODY 50.1 IN COMPLEX WITH ITS V3 LOOP PEPTIDE ANTIGEN

Stanfield, R.L., Rini, J.M., Wilson, I.A.

(1993) Proc Natl Acad Sci U S A 90: 6325-6329

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate MN) Mus musculus
Macromolecule	HIV-1 V3 LOOP PEPTIDE ANTIGEN (protein) IGG2A 50.1 FAB (HEAVY CHAIN) (protein) IGG2A 50.1 FAB (LIGHT CHAIN) (protein)

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1K5M \| pdb_00001k5m	Download File View File

Crystal Structure of a Human Rhinovirus Type 14:Human Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus MN-III-2

Ding, J., Smith, A.D., Geisler, S.C., Ma, X., Arnold, G.F., Arnold, E.

(2002) Structure 10: 999-1011

Released	2002-07-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	HIV-1 M:B_MN rhinovirus B14
Macromolecule	CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 (protein) COAT PROTEIN VP1 (P1D) (protein) COAT PROTEIN VP3 (P1C) (protein) COAT PROTEIN VP4 (P1A) (protein)
Unique Ligands	SPH

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1NAK \| pdb_00001nak	Download File View File

IGG1 FAB FRAGMENT (83.1) COMPLEX WITH 16-RESIDUE PEPTIDE (RESIDUES 304-321 OF HIV-1 GP120 (MN ISOLATE))

Stanfield, R.L., Ghiara, J.B., Saphire, E.O., Profy, A.T., Wilson, I.A.

(2003) Virology 315: 159-173

Released	2003-11-18
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate MN) Mus musculus
Macromolecule	Fab 83.1 - heavy chain (protein) Fab 83.1 - light chain (protein) Peptide MP1 (protein)

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1Q1J \| pdb_00001q1j	Download File View File

Crystal Structure Analysis of anti-HIV-1 Fab 447-52D in complex with V3 peptide

Stanfield, R.L., Gorny, M.K., Williams, C., Zolla-Pazner, S., Wilson, I.A.

(2004) Structure 12: 193-204

Released	2004-02-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype B (isolate MN)
Macromolecule	Fab 447-52D, heavy chain (protein) Fab 447-52D, light chain (protein) gp120 V3 peptide (protein)

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2B0S \| pdb_00002b0s	Download File View File

Crystal structure analysis of anti-HIV-1 V3 Fab 2219 in complex with MN peptide

Stanfield, R.L., Gorny, M.K., Zolla-Pazner, S., Wilson, I.A.

(2006) J Virol 80: 6093-6105

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype B (isolate MN)
Macromolecule	Fab 2219, heavy chain (protein) Fab 2219, light chain (protein) MN peptide of Exterior membrane glycoprotein GP120 (protein)
Unique Ligands	ACY, EDO

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2QSC \| pdb_00002qsc	Download File View File

Crystal structure analysis of anti-HIV-1 V3-Fab F425-B4e8 in complex with a V3-peptide

Bell, C.H., Schiefner, A., Stanfield, R.L., Wilson, I.A.

(2008) J Mol Biology 375: 969-978

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype B (isolate MN)
Macromolecule	Envelope glycoprotein gp120 (protein) Fab F425-B4e8, Heavy chain (protein) Fab F425-B4e8, Light chain (protein)
Unique Ligands	CL, ZN
Unique branched monosaccharides	BMA, NAG

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3MLW \| pdb_00003mlw	Download File View File

Crystal structure of anti-HIV-1 V3 Fab 1006-15D in complex with an MN V3 peptide

Kong, X.-P.

(2010) Nat Struct Mol Biol 17: 955-961

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	HIV-1 M:B_MN Homo sapiens
Macromolecule	HIV-1 gp120 third variable region (V3) crown (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody 1006-15D Fab heavy chain (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody 1006-15D Fab light chain (protein)
Unique Ligands	PO4

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3MLX \| pdb_00003mlx	Download File View File

Crystal structure of anti-HIV-1 V3 Fab 3074 in complex with an MN V3 peptide

Kong, X.-P.

(2010) Nat Struct Mol Biol 17: 955-961

Released	2010-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	HIV-1 M:B_MN Homo sapiens
Macromolecule	HIV-1 gp120 third variable region (V3) crown (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody 3074 Fab heavy chain (protein) Human monoclonal anti-HIV-1 gp120 V3 antibody 3074 Fab light chain (protein)

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3UJI \| pdb_00003uji	Download File View File

Crystal structure of anti-HIV-1 V3 Fab 2558 in complex with MN peptide

Kong, X.P.

(2011) PLoS One 6: e27780-e27780

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	HIV-1 M:B_MN Homo sapiens
Macromolecule	Envelope glycoprotein gp160 (protein) Fab region of the heavy chain of anti-HIV-1 V3 monoclonal antibody 2558 (protein) Light chain of anti-HIV-1 V3 monoclonal antibody 2558 (protein)
Unique Ligands	CA
Unique branched monosaccharides	FUC, NAG

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4M1D \| pdb_00004m1d	Download File View File

Crystal structure of anti-HIV-1 Fab 447-52D in complex with V3 cyclic peptide MN

Killikelly, A., Kong, X.P.

(2013) Biochemistry 52: 6249-6257

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype B (isolate MN)
Macromolecule	Cyclic V3 Arch Peptide (protein) Fab mAb 447-52D Heavy Chain (protein) Fab mAb 447-52D Light Chain (protein)
Unique Ligands	GOL

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5KD7 \| pdb_00005kd7	Download File View File

Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a Variant of Peptide (PV9) of HIV gp120 MN Isolate (IGPGRAFYV)

Jiang, J., Natarajan, K., Margulies, D.

(2018) J Immunol 200: 1853-1864

Released	2017-10-11
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	HIV-1 M:B_MN Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-D alpha chain (protein) Peptide (PV9) of HIV gp120 MN isolate (IGPGRAFYV) (protein)
Unique Ligands	EDO, GOL

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5T7G \| pdb_00005t7g	Download File View File

Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a Variant of Peptide (PT9) of HIV gp120 MN Isolate (IGPGRAFYT)

Jiang, J., Natarajan, K., Margulies, D.

(2018) J Immunol 200: 1853-1864

Released	2017-10-11
Method	X-RAY DIFFRACTION 1.961 Å
Organisms	HIV-1 M:B_MN Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-D alpha chain (protein) Peptide (PT9) of HIV gp120 MN isolate (IGPGRAFYT) (protein)
Unique Ligands	EDO

1AAF | pdb_00001aaf

NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1

1ACY | pdb_00001acy

CRYSTAL STRUCTURE OF THE PRINCIPAL NEUTRALIZING SITE OF HIV-1

1AI1 | pdb_00001ai1

HIV-1 V3 LOOP MIMIC

1F58 | pdb_00001f58

IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 24-RESIDUE PEPTIDE (RESIDUES 308-333 OF HIV-1 GP120 (MN ISOLATE) WITH ALA TO AIB SUBSTITUTION AT POSITION 323

1GGI | pdb_00001ggi

CRYSTAL STRUCTURE OF AN HIV-1 NEUTRALIZING ANTIBODY 50.1 IN COMPLEX WITH ITS V3 LOOP PEPTIDE ANTIGEN

1K5M | pdb_00001k5m

Crystal Structure of a Human Rhinovirus Type 14:Human Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus MN-III-2

1NAK | pdb_00001nak

IGG1 FAB FRAGMENT (83.1) COMPLEX WITH 16-RESIDUE PEPTIDE (RESIDUES 304-321 OF HIV-1 GP120 (MN ISOLATE))

1Q1J | pdb_00001q1j

Crystal Structure Analysis of anti-HIV-1 Fab 447-52D in complex with V3 peptide

2B0S | pdb_00002b0s

Crystal structure analysis of anti-HIV-1 V3 Fab 2219 in complex with MN peptide

2QSC | pdb_00002qsc

Crystal structure analysis of anti-HIV-1 V3-Fab F425-B4e8 in complex with a V3-peptide

3MLW | pdb_00003mlw

Crystal structure of anti-HIV-1 V3 Fab 1006-15D in complex with an MN V3 peptide

3MLX | pdb_00003mlx

Crystal structure of anti-HIV-1 V3 Fab 3074 in complex with an MN V3 peptide

3UJI | pdb_00003uji

Crystal structure of anti-HIV-1 V3 Fab 2558 in complex with MN peptide

4M1D | pdb_00004m1d

Crystal structure of anti-HIV-1 Fab 447-52D in complex with V3 cyclic peptide MN

5KD7 | pdb_00005kd7

Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a Variant of Peptide (PV9) of HIV gp120 MN Isolate (IGPGRAFYV)

5T7G | pdb_00005t7g

Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a Variant of Peptide (PT9) of HIV gp120 MN Isolate (IGPGRAFYT)

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1AAF | pdb_00001aaf

1ACY | pdb_00001acy

1AI1 | pdb_00001ai1

1F58 | pdb_00001f58

1GGI | pdb_00001ggi

1K5M | pdb_00001k5m

1NAK | pdb_00001nak

1Q1J | pdb_00001q1j

2B0S | pdb_00002b0s

2QSC | pdb_00002qsc

3MLW | pdb_00003mlw

3MLX | pdb_00003mlx

3UJI | pdb_00003uji

4M1D | pdb_00004m1d

5KD7 | pdb_00005kd7

5T7G | pdb_00005t7g