RCSB PDB: Search

1PJI \| pdb_00001pji	Download File View File

Crystal structure of wild type Lactococcus lactis FPG complexed to a 1,3 propanediol containing DNA

Pereira, K., Serre, L., Zelwer, C., Castaing, B.

(2005) Nucleic Acids Res 33: 5936-5944

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lactococcus cremoris
Macromolecule	Formamidopyrimidine-DNA glycosylase (protein) DNA (5'-D(CPTPCPTPTPTP(PDI)PTPTPTPCPTPCPG)-3') (nucleic acid) DNA (5'-D(GPCPGPAPGPAPAPAPCPAPAPAPGPA)-3') (nucleic acid)
Unique Ligands	GOL, ZN

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1PM5 \| pdb_00001pm5	Download File View File

Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA

Pereira de Jesus-Tran, K., Serre, L., Zelwer, C., Castaing, B.

(2005) Nucleic Acids Res 33: 5936-5944

Released	2004-07-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Lactococcus cremoris
Macromolecule	Formamidopyrimidine-DNA glycosylase (protein) DNA (5'-D(CPTPCPTPTPTP(3DR)PTPTPTPCPTPCPG)-3') (nucleic acid) DNA (5'-D(GPCPGPAPGPAPAPAPCPAPAPAPGPA)-3') (nucleic acid)
Unique Ligands	GOL, ZN

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1XC8 \| pdb_00001xc8	Download File View File

CRYSTAL STRUCTURE COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND A FAPY-DG CONTAINING DNA

Coste, F., Ober, M., Carell, T., Boiteux, S., Zelwer, C., Castaing, B.

(2004) J Biological Chem 279: 44074-44083

Released	2005-09-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Lactococcus cremoris
Macromolecule	Formamidopyrimidine-DNA glycosylase (protein) 5'-D(CPTPCPTPTPTP(FOX)PTPTPTPCPTPCPG)-3' (nucleic acid) 5'-D(GPCPGPAPGPAPAPAPCPAPAPAPGPA)-3' (nucleic acid)
Unique Ligands	GOL, ZN

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2XZF \| pdb_00002xzf	Download File View File

CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND AN OXIDIZED PYRIMIDINE CONTAINING DNA AT 293K

LeBihan, Y.V., Izquierdo, M.A., Coste, F., Culard, F., Gehrke, T.H., Essalhi, K., Aller, P., Carrel, T., Castaing, B.

(2011) Nucleic Acids Res 39: 6277

Released	2011-10-05
Method	X-RAY DIFFRACTION 1.799 Å
Organisms	Lactococcus cremoris synthetic construct
Macromolecule	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (protein) 5'-D(CPTPCPTPTPTPVETPTPTPTPCPTPCPGP)-3' (nucleic acid) 5'-D(GPAPGPAPAPAPCPAPAPAPGPAPGPCP)-3' (nucleic acid)
Unique Ligands	GOL, ZN

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2XZU \| pdb_00002xzu	Download File View File

CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND AN OXIDIZED PYRIMIDINE CONTAINING DNA AT 310K

Lebihan, Y.V., Izquierdo, M.A., Coste, F., Culard, F., Gehrke, T.H., Essalhi, K., Aller, P., Carrel, T., Castaing, B.

(2011) Nucleic Acids Res 39: 6277

Released	2011-10-05
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Lactococcus cremoris synthetic construct
Macromolecule	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (protein) 5'-D(CPTPCPTPTPTPVETPTPTPTPCPTPCPG)-3' (nucleic acid) 5'-D(GPCPGPAPGPAPAPAPCPAPAPAPG*A)-3' (nucleic acid)
Unique Ligands	GOL, ZN

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3C58 \| pdb_00003c58	Download File View File

Crystal structure of a complex between the wild-type lactococcus lactis Fpg (MutM) and a N7-Benzyl-Fapy-dG containing DNA

Coste, F., Castaing, B., Carell, T.

(2008) Chem Biol 15: 706-717

Released	2008-12-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	DNA glycosylase (protein) DNA (5'-D(DCPDTPDCPDTPDTPDTP(SOS)PDTPDTPDTPDCPDTPDCPDG)-3') (nucleic acid) DNA (5'-D(DGPDCPDGPDAPDGPDAPDAPDAPDCPDAPDAPDAPDGPDA)-3') (nucleic acid)
Unique Ligands	GOL, ZN

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3DRF \| pdb_00003drf	Download File View File

Lactococcal OppA complexed with an endogenous peptide in the closed conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide-binding protein oppA (protein) endogenous peptide (protein)

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3DRG \| pdb_00003drg	Download File View File

Lactococcal OppA complexed with bradykinin in the closed conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Bradykinin (protein) Oligopeptide-binding protein oppA (protein)
Unique Ligands	CL

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3DRH \| pdb_00003drh	Download File View File

Crystal structure of Lactococcal OppA co-crystallized with Leu-enkephalin in an open conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide-binding protein oppA (protein) peptide AAAAAA (protein)

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3DRI \| pdb_00003dri	Download File View File

Crystal structure of Lactococcal OppA co-crystallized with an octamer peptide in an open conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide-binding protein oppA (protein) peptide AASASA (protein)

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3DRJ \| pdb_00003drj	Download File View File

Crystal structure of Lactococcal OppA co-crystallized with pTH-related peptide in an open conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide-binding protein oppA (protein) pTH-related peptide (protein)

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3DRK \| pdb_00003drk	Download File View File

Crystal structure of Lactococcal OppA co-crystallized with Neuropeptide S in an open conformation

Berntsson, R.P.-A., Doeven, M.K., Duurkens, R.H., Sengupta, D., Marrink, S.-J., Thunnissen, A.-M., Poolman, B., Slotboom, D.-J.

(2009) EMBO J 28: 1332-1340

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Neuropeptide S (protein) Oligopeptide-binding protein oppA (protein)

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3F8B \| pdb_00003f8b	Download File View File

Crystal structure of the multidrug binding transcriptional regulator LmrR in drug free state

Madoori, P.K., Agustiandari, H., Driessen, A.J.M., Thunnissen, A.-M.W.H.

(2009) EMBO J 28: 156-166

Released	2008-12-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Transcriptional regulator, PadR-like family (protein)

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3F8C \| pdb_00003f8c	Download File View File

Crystal structure of multidrug binding transcriptional regulator LmrR complexed with Hoechst 33342

Madoori, P.K., Agustiandari, H., Driessen, A.J.M., Thunnissen, A.-M.W.H.

(2009) EMBO J 28: 156-166

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Transcriptional regulator, PadR-like family (protein)
Unique Ligands	HT1

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3F8F \| pdb_00003f8f	Download File View File

Crystal structure of multidrug binding transcriptional regulator LmrR complexed with Daunomycin

Madoori, P.K., Agustiandari, H., Driessen, A.J.M., Thunnissen, A.-M.W.H.

(2009) EMBO J 28: 156-166

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Transcriptional regulator, PadR-like family (protein)
Unique Ligands	DM1

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3FTO \| pdb_00003fto	Download File View File

Crystal structure of OppA in a open conformation

Berntsson, R.P.-A., Oktaviani, N.A., Fusetti, F., Thunnissen, A.-M.W.H., Poolman, B., Slotboom, D.-J.

(2009) Protein Sci 18: 1121-1127

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Lactococcus cremoris
Macromolecule	Oligopeptide-binding protein oppA (protein)

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3RLB \| pdb_00003rlb	Download File View File

Crystal structure at 2.0 A of the S-component for thiamin from an ECF-type ABC transporter

Erkens, G.B., Berntsson, R.P.-A., Fulyani, F., Majsnerowska, M., Vujicic-Zagar, A., ter Beek, J., Poolman, B., Slotboom, D.J.

(2011) Nat Struct Mol Biol 18: 755-760

Released	2011-06-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	ThiT (protein)
Unique Ligands	BNG, VIB

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3RYA \| pdb_00003rya	Download File View File

Lactococcal OppA complexed with SLSQLSSQS

Berntsson, R.P.-A., Thunnissen, A.-M.W.H., Poolman, B., Slotboom, D.-J.

(2011) J Bacteriol 193: 4254-4256

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide (protein) Oligopeptide-binding protein oppA (protein)

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3RYB \| pdb_00003ryb	Download File View File

Lactococcal OppA complexed with SLSQSLSQS

Berntsson, R.P.-A., Thunnissen, A.-M.W.H., Poolman, B., Slotboom, D.-J.

(2011) J Bacteriol 193: 4254-4256

Released	2011-06-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Oligopeptide (protein) Oligopeptide-binding protein oppA (protein)

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4BND \| pdb_00004bnd	Download File View File

Structure of an atypical alpha-phosphoglucomutase similar to eukaryotic phosphomannomutases

Nogly, P., Matias, P.M., De Rosa, M., Castro, R., Santos, H., Neves, A.R., Archer, M.

(2013) Acta Crystallogr D Biol Crystallogr 69: 2008

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	ALPHA-PHOSPHOGLUCOMUTASE (protein)
Unique Ligands	GOL, SO4

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4CIS \| pdb_00004cis	Download File View File

Structure of MutM in complex with carbocyclic 8-oxo-G containing DNA

Schneider, S., Sadeghian, K., Flaig, D., Blank, I.D., Strasser, R., Stathis, D., Winnacker, M., Carell, T., Ochsenfeld, C.

(2014) Angew Chem Int Ed Engl 53: 10044-10048

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Lactococcus cremoris synthetic construct
Macromolecule	FORMAMIDOPYRIMIDIN DNA GLYCOSYLASE (protein) DNA (nucleic acid)
Unique Ligands	BU3, ZN

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4DVE \| pdb_00004dve	Download File View File

Crystal structure at 2.1 A of the S-component for biotin from an ECF-type ABC transporter

Berntsson, R.P.-A., ter Beek, J., Majsnerowska, M., Duurkens, R., Puri, P., Poolman, B., Slotboom, D.J.

(2012) Proc Natl Acad Sci U S A 109: 13990-13995

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Biotin transporter BioY (protein)
Unique Ligands	BNG, BTN

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4MES \| pdb_00004mes	Download File View File

Crystal structure of ThiT complexed with LMG116

Swier, L.J.Y.M., Guskov, A., Slotboom, D.J.

To be published

Released	2014-08-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	Thiamine transporter ThiT (protein)
Unique Ligands	1PE, 26G, BNG, P6G, PEG, PG0, PG4

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4MHW \| pdb_00004mhw	Download File View File

Crystal structure of ThiT with small molecule BAT-25

Swier, L.J.Y.M., Guskov, A., Slotboom, D.J.

To be published

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	Thiamine transporter ThiT (protein)
Unique Ligands	0YN, 1PE, BNG, P6G, PE4, PEG, PG0, PG4

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4MUU \| pdb_00004muu	Download File View File

Structure of ThiT with pyrithiamine bound

Swier, L.J.Y.M., Guskov, A., Slotboom, D.J.

To be published

Released	2014-09-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	Thiamine transporter ThiT (protein)
Unique Ligands	1PE, 218, BNG, P6G, PE5, PEG, PG0, PG4, PGE

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1PJI | pdb_00001pji

1PM5 | pdb_00001pm5

1XC8 | pdb_00001xc8

2XZF | pdb_00002xzf

2XZU | pdb_00002xzu

3C58 | pdb_00003c58

3DRF | pdb_00003drf

3DRG | pdb_00003drg

3DRH | pdb_00003drh

3DRI | pdb_00003dri

3DRJ | pdb_00003drj

3DRK | pdb_00003drk

3F8B | pdb_00003f8b

3F8C | pdb_00003f8c

3F8F | pdb_00003f8f

3FTO | pdb_00003fto

3RLB | pdb_00003rlb

3RYA | pdb_00003rya

3RYB | pdb_00003ryb

4BND | pdb_00004bnd

4CIS | pdb_00004cis

4DVE | pdb_00004dve

4MES | pdb_00004mes

4MHW | pdb_00004mhw

4MUU | pdb_00004muu