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241,345
Structures from the PDB archive

1,068,577
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QUERY: Structure Keywords HAS EXACT PHRASE "ISOMERASE/CHAPERONE"

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This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Thermus thermophilus (8)
	Escherichia coli K-12 (5)
	Homo sapiens (5)
	Aspergillus oryzae (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	Bacteria (8)
	Eukaryota (7)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (1)
	2015 - 2019 (8)
	2020 - 2024 (1)

Enzyme Classification Name

	Isomerases (11)
	Hydrolases (1)
	Lyases (1)

Symmetry Type

Asymmetric (11)

SCOP Classification

	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)
	Artifacts (1)
	Small proteins (1)

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1 to 11 of 11 Structures

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1QZ2 \| pdb_00001qz2	Download File View File

Crystal Structure of FKBP52 C-terminal Domain complex with the C-terminal peptide MEEVD of Hsp90

Wu, B., Li, P., Lou, Z., Liu, Y., Ding, Y., Shu, C., Shen, B., Rao, Z.

(2004) Proc Natl Acad Sci U S A 101: 8348-8353

Released	2004-06-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	5-mer peptide from Heat shock protein HSP 90 (protein) FK506-binding protein 4 (protein)

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3UAI \| pdb_00003uai	Download File View File

Structure of the Shq1-Cbf5-Nop10-Gar1 complex from Saccharomyces cerevisiae

Ye, K.

(2011) EMBO J 30: 5010-5020

Released	2011-12-14
Method	X-RAY DIFFRACTION 3.06 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	H/ACA ribonucleoprotein complex subunit 1 (protein) H/ACA ribonucleoprotein complex subunit 3 (protein) H/ACA ribonucleoprotein complex subunit 4 (protein) Protein SHQ1 (protein)

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4ODK \| pdb_00004odk	Download File View File

Structure of SlyD from Thermus thermophilus in complex with T1 peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.401 Å
Organisms	Aspergillus oryzae Thermus thermophilus
Macromolecule	Guanyl-specific ribonuclease T1 (protein) Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	CL

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4ODL \| pdb_00004odl	Download File View File

Structure of SlyD from Thermus thermophilus in complex with S2 peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.916 Å
Organisms	Escherichia coli K-12 Thermus thermophilus
Macromolecule	30S ribosomal protein S2 (protein) Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	CL

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4ODM \| pdb_00004odm	Download File View File

Structure of SlyD from Thermus thermophilus in complex with S2-W23A peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli K-12 Thermus thermophilus
Macromolecule	30S ribosomal protein S2 (protein) Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	ACT, CL, GOL

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4ODN \| pdb_00004odn	Download File View File

Structure of SlyD from Thermus thermophilus in complex with S2-plus peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Escherichia coli K-12 Thermus thermophilus
Macromolecule	30S ribosomal protein S2 (protein) Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	CL, GOL, NA, SO4

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4ODO \| pdb_00004odo	Download File View File

Structure of SlyD from Thermus thermophilus in complex with FK506

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Thermus thermophilus
Macromolecule	Peptidyl-prolyl cis-trans isomerase SlyD (protein)
Unique Ligands	BTB, CL, FK5, GOL, MG

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4ODP \| pdb_00004odp	Download File View File

Structure of SlyD delta-IF from Thermus thermophilus in complex with S2-W23A peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.747 Å
Organisms	Escherichia coli K-12 Homo sapiens Thermus thermophilus
Macromolecule	30S ribosomal protein S2 (protein) Peptidyl-prolyl cis-trans isomerase SlyD, Peptidyl-prolyl cis-trans isomerase FKBP1A chimera (protein)
Unique Ligands	CA, CL, NI

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4ODQ \| pdb_00004odq	Download File View File

Structure of SlyD delta-IF from Thermus thermophilus in complex with S3 peptide

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12 Homo sapiens Thermus thermophilus
Macromolecule	30S ribosomal protein S3 (protein) Peptidyl-prolyl cis-trans isomerase SlyD, Peptidyl-prolyl cis-trans isomerase FKBP1A chimera (protein)
Unique Ligands	CA, CL, NI

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4ODR \| pdb_00004odr	Download File View File

Structure of SlyD delta-IF from Thermus thermophilus in complex with FK506

Quistgaard, E.M., Low, C., Nordlund, P.

(2016) BMC Biol 14: 82-82

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.929 Å
Organisms	Homo sapiens Thermus thermophilus
Macromolecule	Peptidyl-prolyl cis-trans isomerase SlyD, Peptidyl-prolyl cis-trans isomerase FKBP1A chimera (protein)
Unique Ligands	ACT, CL, FK5, GOL, ZN

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7L7I \| pdb_00007l7i	Download File View File

Cryo-EM structure of Hsp90:FKBP51:p23 closed-state complex

Lee, K., Thwin, A.C., Tse, E., Gates, S.N., Southworth, D.R.

(2021) Mol Cell 81: 3496

Released	2021-08-25
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein) Peptidyl-prolyl cis-trans isomerase FKBP5 (protein) Prostaglandin E synthase 3 (protein)
Unique Ligands	ANP

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1QZ2 | pdb_00001qz2

Crystal Structure of FKBP52 C-terminal Domain complex with the C-terminal peptide MEEVD of Hsp90

3UAI | pdb_00003uai

Structure of the Shq1-Cbf5-Nop10-Gar1 complex from Saccharomyces cerevisiae

4ODK | pdb_00004odk

Structure of SlyD from Thermus thermophilus in complex with T1 peptide

4ODL | pdb_00004odl

Structure of SlyD from Thermus thermophilus in complex with S2 peptide

4ODM | pdb_00004odm

Structure of SlyD from Thermus thermophilus in complex with S2-W23A peptide

4ODN | pdb_00004odn

Structure of SlyD from Thermus thermophilus in complex with S2-plus peptide

4ODO | pdb_00004odo

Structure of SlyD from Thermus thermophilus in complex with FK506

4ODP | pdb_00004odp

Structure of SlyD delta-IF from Thermus thermophilus in complex with S2-W23A peptide

4ODQ | pdb_00004odq

Structure of SlyD delta-IF from Thermus thermophilus in complex with S3 peptide

4ODR | pdb_00004odr

Structure of SlyD delta-IF from Thermus thermophilus in complex with FK506

7L7I | pdb_00007l7i

Cryo-EM structure of Hsp90:FKBP51:p23 closed-state complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1QZ2 | pdb_00001qz2

3UAI | pdb_00003uai

4ODK | pdb_00004odk

4ODL | pdb_00004odl

4ODM | pdb_00004odm

4ODN | pdb_00004odn

4ODO | pdb_00004odo

4ODP | pdb_00004odp

4ODQ | pdb_00004odq

4ODR | pdb_00004odr

7L7I | pdb_00007l7i