Crystal structure of GTPase domain fused with minimal stalks from human dynamin-1-like protein (Dlp1) in complex with several nucleotide analogues
Kishida, H., Sugio, S.(2013) Curr Top Pept Protein Res 14: 67-77
Experimental Data Snapshot
Starting Model: experimental
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(2013) Curr Top Pept Protein Res 14: 67-77
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Dynamin-1-like protein | 364 | Homo sapiens | Mutation(s): 0  Gene Names: DNM1L, DLP1, DRP1 EC: 3.6.5.5 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O00429 (Homo sapiens) Explore O00429  Go to UniProtKB:  O00429 | |||||
PHAROS:  O00429 GTEx:  ENSG00000087470  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O00429 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GNH Query on GNH | C [auth A], F [auth B] | AMINOPHOSPHONIC ACID-GUANYLATE ESTER C10 H16 N6 O10 P2 ZGPDMUBRWRJAQQ-UUOKFMHZSA-N | |||
PG4 Query on PG4 | J [auth B], K [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
PO4 Query on PO4 | D [auth A], G [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
CA Query on CA | I [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
MG Query on MG | E [auth A], H [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 51.34 | α = 90 |
b = 109.02 | β = 90 |
c = 128.82 | γ = 90 |
Software Name | Purpose |
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PHASER | phasing |
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |