4TTD | pdb_00004ttd

Structure of a lysozyme antibody complex

PDB DOI: https://doi.org/10.2210/pdb4TTD/pdb

Classification: IMMUNE SYSTEM
Organism(s): Gallus gallus, Homo sapiens
Expression System: Cricetulus griseus
Mutation(s): No

Deposited: 2014-06-20 Released: 2015-07-08
Deposition Author(s): Wensley, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.279 (Depositor), 0.290 (DCC)
R-Value Work:
0.255 (Depositor), 0.250 (DCC)
R-Value Observed:
0.256 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of a lysozyme antibody complex

Wensley, B.

To be published.

Macromolecule Content

Total Structure Weight: 121.16 kDa
Atom Count: 8,619
Modeled Residue Count: 1,110
Deposited Residue Count: 1,136
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A, B	129	Gallus gallus	Mutation(s): 0 EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00698
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
FAb Heavy Chain	C, E [auth H]	222	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
FAb Light Chain	D, F [auth L]	217	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.279 (Depositor), 0.290 (DCC)
R-Value Work: 0.255 (Depositor), 0.250 (DCC)
R-Value Observed: 0.256 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.9	α = 102.4
b = 64.3	β = 101.8
c = 76.6	γ = 102.4

Software Package:

Software Name	Purpose
BUSTER	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-07-08

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-07-08
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.