4CUT | pdb_00004cut

Crystal structure of human BAZ2B in complex with fragment-5 N09428

• PDB DOI: https://doi.org/10.2210/pdb4CUT/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-03-21 Released: 2014-04-02 
• Deposition Author(s): Bradley, A.R., Liu, Y., Krojer, T., Bountra, C., Arrowsmith, C.H., Edwards, A., Knapp, S., von Delft, F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.83 Å
• R-Value Free: 
  0.197 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.169 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.170 (Depositor) 

Literature

Crystal Structure of Human Baz2B in Complex with Fragment-5 N09428

Bradley, A.R., Liu, Y., Krojer, T., Bountra, C., Arrowsmith, C.H., Edwards, A., Knapp, S., von Delft, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 14.02 kDa 
• Atom Count: 1,132 
• Modeled Residue Count: 115 
• Deposited Residue Count: 117 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B	A	117	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UIF8 (Homo sapiens) Explore Q9UIF8  Go to UniProtKB:  Q9UIF8
PHAROS:  Q9UIF8 GTEx:  ENSG00000123636

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TYL	B [auth A]	N-(4-HYDROXYPHENYL)ACETAMIDE (TYLENOL) C8 H9 N O2 RZVAJINKPMORJF-UHFFFAOYSA-N
EDO	C [auth A], D [auth A], E [auth A], F [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.83 Å
• R-Value Free:  0.197 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.169 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.170 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.495	α = 90
b = 97.084	β = 90
c = 58.127	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-04-02 
Deposition Author(s): Bradley, A.R., Liu, Y., Krojer, T., Bountra, C., Arrowsmith, C.H., Edwards, A., Knapp, S., von Delft, F.

Revision History  

• Version 1.0: 2014-04-02
  Type: Initial release
  
• Version 1.1: 2018-01-24
  Changes: Database references
• Version 1.2: 2019-09-11
  Changes: Data collection, Database references, Refinement description
• Version 1.3: 2024-05-08
  Changes: Data collection, Database references, Derived calculations, Other