8FJB | pdb_00008fjb

CryoEM structure of HLA-A2 MAGEA4 (286-294) in complex with H2aM31345N Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

CAR T cells based on fully human T cell receptor-mimetic antibodies exhibit potent antitumor activity in vivo.

Salzler, R.DiLillo, D.J.Saotome, K.Bray, K.Mohrs, K.Hwang, H.Cygan, K.J.Shah, D.Rye-Weller, A.Kundu, K.Badithe, A.Zhang, X.Garnova, E.Torres, M.Dhanik, A.Babb, R.Delfino, F.J.Thwaites, C.Dudgeon, D.Moore, M.J.Meagher, T.C.Decker, C.E.Owczarek, T.Gleason, J.A.Yang, X.Suh, D.Lee, W.Y.Welsh, R.MacDonald, D.Hansen, J.Guo, C.Kirshner, J.R.Thurston, G.Huang, T.Franklin, M.C.Yancopoulos, G.D.Lin, J.C.Macdonald, L.E.Murphy, A.J.Chen, G.Olsen, O.Olson, W.C.

(2025) Sci Transl Med 17: eado9371-eado9371

  • DOI: https://doi.org/10.1126/scitranslmed.ado9371
  • Primary Citation of Related Structures:  
    8FJA, 8FJB

  • PubMed Abstract: 

    Monoclonal antibody therapies have transformed the lives of patients across a diverse range of diseases. However, antibodies can usually only access extracellular proteins, including the extracellular portions of membrane proteins that are expressed on the cell surface. In contrast, T cell receptors (TCRs) survey the entire cellular proteome when processed and presented as peptides in association with human leukocyte antigen (pHLA complexes). Antibodies that mimic TCRs by recognizing pHLA complexes have the potential to extend the reach of antibodies to this larger pool of targets and provide increased binding affinity and specificity. A major challenge in developing TCR mimetic (TCRm) antibodies is the limited sequence differences between the target pHLA complex relative to the large global repertoire of pHLA complexes. Here, we provide a comprehensive strategy for generating fully human TCRm antibodies across multiple HLA alleles, beginning with pHLA target discovery and validation and culminating in the engineering of TCRm-based chimeric antigen receptor T cells with potent antitumor activity. By incorporating mass spectrometry, bioinformatic predictions, HLA-humanized mice, antibody screening, and cryo-electron microscopy, we have established a pipeline to identify additional pHLA complex-specific antibodies with therapeutic potential.


  • Organizational Affiliation
    • Regeneron Pharmaceuticals, 777 Old Saw Mill River Road, Tarrytown, NY 10591, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MHC class I antigen277Homo sapiensMutation(s): 0 
Gene Names: HLA-A*02:01
UniProt
Find proteins for Q861F7 (Homo sapiens)
Explore Q861F7 
Go to UniProtKB:  Q861F7
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UniProt GroupQ861F7
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-2-microglobulin100Homo sapiensMutation(s): 0 
Gene Names: B2MCDABP0092HDCMA22P
UniProt & NIH Common Fund Data Resources
Find proteins for P61769 (Homo sapiens)
Explore P61769 
Go to UniProtKB:  P61769
PHAROS:  P61769
GTEx:  ENSG00000166710 
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UniProt GroupP61769
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Melanoma-associated antigen 4 peptide9Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P43361 (Homo sapiens)
Explore P43361 
Go to UniProtKB:  P43361
PHAROS:  P43361
GTEx:  ENSG00000156009 
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UniProt GroupP43361
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
H2aM31345N Fab heavy chainD [auth E]223Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
H2aM31345N Fab light chainE [auth D]215Homo sapiensMutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Data collection, Structure summary
  • Version 1.2: 2025-07-02
    Changes: Data collection, Database references