8HVT | pdb_00008hvt

Deposited: 2022-12-27 Released: 2024-01-03
Deposition Author(s): Zhang, Z.X., Chen, L., He, J., She, J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

(2023) JUSTC 53

Macromolecule Content

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
H(+)/Cl(-) exchange transporter 7	A, C	805	Homo sapiens	Mutation(s): 0 Gene Names: CLCN7 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P51798 (Homo sapiens) Explore P51798 Go to UniProtKB: P51798
PHAROS: P51798 GTEx: ENSG00000103249
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P51798
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Osteopetrosis-associated transmembrane protein 1	B, D	334	Homo sapiens	Mutation(s): 0 Gene Names: OSTM1, GL, HSPC019, UNQ6098/PRO21201 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q86WC4 (Homo sapiens) Explore Q86WC4 Go to UniProtKB: Q86WC4
PHAROS: Q86WC4 GTEx: ENSG00000081087
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q86WC4
Glycosylation
Glycosylation Sites: 4	Glycosylation Focus chain B Focus chain D	Go to GlyGen: Q86WC4-1
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E, F	3		N-Glycosylation	Interactions Focus chain E Focus chain F Interactions & Density Focus chain E Focus chain F
Glycosylation Resources
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG (Subject of Investigation/LOI) Query on NAG Download Ideal Coordinates CCD File SDF format, chain K [auth D] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain I [auth B] SDF format, chain J [auth D] SDF format, chain L [auth D] MOL2 format, chain K [auth D] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B] MOL2 format, chain J [auth D] MOL2 format, chain L [auth D] mmCIF format, chain K [auth D] mmCIF format, chain G [auth B] mmCIF format, chain H [auth B] mmCIF format, chain I [auth B] mmCIF format, chain J [auth D] mmCIF format, chain L [auth D]	G [auth B] H [auth B] I [auth B] J [auth D] K [auth D] G [auth B], H [auth B], I [auth B], J [auth D], K [auth D], L [auth D]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth D] Focus chain K [auth D] Focus chain L [auth D] Interactions & Density Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth D] Focus chain K [auth D] Focus chain L [auth D]

Experimental Data & Validation

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Entry History & Funding Information

Deposition Author(s):

Zhang, Z.X.

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	GG2070000569

Version 1.0: 2024-01-03
Type: Initial release
Version 1.1: 2024-07-17
Changes: Data collection, Database references
Version 1.2: 2024-10-23
Changes: Data collection, Database references, Structure summary
Version 1.3: 2025-07-02
Changes: Data collection