8JG3 | pdb_00008jg3

Biosynthetic thiolase from Clostridium kluyveri

PDB DOI: https://doi.org/10.2210/pdb8JG3/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Clostridium kluyveri
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-05-19 Released: 2024-05-08
Deposition Author(s): Kim, E.-J., Seo, H., Kim, K.-J.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.240 (Depositor), 0.240 (DCC)
R-Value Work:
0.209 (Depositor), 0.220 (DCC)
R-Value Observed:
0.210 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of biosynthetic thiolase from Clostridium kluyveri

Jeon, B.S., Kim, E.-J., Kim, K.-J., Sang, B.-I.

To be published.

Macromolecule Content

Total Structure Weight: 85.23 kDa
Atom Count: 5,806
Modeled Residue Count: 770
Deposited Residue Count: 802
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-CoA C-acetyltransferase	A, B	401	Clostridium kluyveri	Mutation(s): 0 Gene Names: CKR_3261 EC: 2.3.1.9
UniProt
Find proteins for B9DX69 (Clostridium kluyveri (strain NBRC 12016)) Explore B9DX69 Go to UniProtKB: B9DX69
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B9DX69
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.240 (Depositor), 0.240 (DCC)
R-Value Work: 0.209 (Depositor), 0.220 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.568	α = 90
b = 73.568	β = 90
c = 273.996	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2024-05-08
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.