8S6Y | pdb_00008s6y

Co-crystal structure of TEAD1 with OPN-9652

PDB DOI: https://doi.org/10.2210/pdb8S6Y/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-02-28 Released: 2025-07-30
Deposition Author(s): Aplin, A.E.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.03 Å
R-Value Free:
0.258 (Depositor), 0.263 (DCC)
R-Value Work:
0.223 (Depositor), 0.226 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Targeting TAZ-TEAD in minimal residual disease enhances the duration of targeted therapy in melanoma models

Aplin, A.E.

To be published.

Macromolecule Content

Total Structure Weight: 104.63 kDa
Atom Count: 8,177
Modeled Residue Count: 856
Deposited Residue Count: 868
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional enhancer factor TEF-1	A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD]	217	Homo sapiens	Mutation(s): 0 Gene Names: TEAD1, TCF13, TEF1
UniProt & NIH Common Fund Data Resources
Find proteins for P28347 (Homo sapiens) Explore P28347 Go to UniProtKB: P28347
PHAROS: P28347 GTEx: ENSG00000187079
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P28347
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1H5I (Subject of Investigation/LOI) Query on A1H5I Download Ideal Coordinates CCD File SDF format, chain BA [auth CCC] SDF format, chain E [auth AAA] SDF format, chain OA [auth DDD] SDF format, chain Q [auth BBB] MOL2 format, chain BA [auth CCC] MOL2 format, chain E [auth AAA] MOL2 format, chain OA [auth DDD] MOL2 format, chain Q [auth BBB] mmCIF format, chain BA [auth CCC] mmCIF format, chain E [auth AAA] mmCIF format, chain OA [auth DDD] mmCIF format, chain Q [auth BBB]	BA [auth CCC], E [auth AAA], OA [auth DDD], Q [auth BBB]	1-[7-[3-fluoranyl-4-(trifluoromethyl)phenoxy]-3,4-dihydro-1~{H}-isoquinolin-2-yl]propan-1-one C₁₉ H₁₇ F₄ N O₂ DTKJDFBXPMKXOJ-UHFFFAOYSA-N		Interactions Focus chain BA [auth CCC] Focus chain E [auth AAA] Focus chain OA [auth DDD] Focus chain Q [auth BBB] Interactions & Density Focus chain BA [auth CCC] Focus chain E [auth AAA] Focus chain OA [auth DDD] Focus chain Q [auth BBB]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain RA [auth DDD] SDF format, chain X [auth BBB] MOL2 format, chain RA [auth DDD] MOL2 format, chain X [auth BBB] mmCIF format, chain RA [auth DDD] mmCIF format, chain X [auth BBB]	RA [auth DDD], X [auth BBB]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain RA [auth DDD] Focus chain X [auth BBB] Interactions & Density Focus chain RA [auth DDD] Focus chain X [auth BBB]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain FA [auth CCC] SDF format, chain G [auth AAA] SDF format, chain GA [auth CCC] SDF format, chain HA [auth CCC] SDF format, chain J [auth AAA] SDF format, chain N [auth AAA] SDF format, chain SA [auth DDD] SDF format, chain TA [auth DDD] SDF format, chain U [auth BBB] SDF format, chain V [auth BBB] SDF format, chain W [auth BBB] SDF format, chain H [auth AAA] MOL2 format, chain FA [auth CCC] MOL2 format, chain G [auth AAA] MOL2 format, chain GA [auth CCC] MOL2 format, chain HA [auth CCC] MOL2 format, chain J [auth AAA] MOL2 format, chain N [auth AAA] MOL2 format, chain SA [auth DDD] MOL2 format, chain TA [auth DDD] MOL2 format, chain U [auth BBB] MOL2 format, chain V [auth BBB] MOL2 format, chain W [auth BBB] MOL2 format, chain H [auth AAA] mmCIF format, chain FA [auth CCC] mmCIF format, chain G [auth AAA] mmCIF format, chain GA [auth CCC] mmCIF format, chain HA [auth CCC] mmCIF format, chain J [auth AAA] mmCIF format, chain N [auth AAA] mmCIF format, chain SA [auth DDD] mmCIF format, chain TA [auth DDD] mmCIF format, chain U [auth BBB] mmCIF format, chain V [auth BBB] mmCIF format, chain W [auth BBB] mmCIF format, chain H [auth AAA]	FA [auth CCC] G [auth AAA] GA [auth CCC] H [auth AAA] HA [auth CCC] FA [auth CCC], G [auth AAA], GA [auth CCC], H [auth AAA], HA [auth CCC], J [auth AAA], N [auth AAA], SA [auth DDD], TA [auth DDD], U [auth BBB], V [auth BBB], W [auth BBB]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain FA [auth CCC] Focus chain G [auth AAA] Focus chain GA [auth CCC] Focus chain H [auth AAA] Focus chain HA [auth CCC] Focus chain J [auth AAA] Focus chain N [auth AAA] Focus chain SA [auth DDD] Focus chain TA [auth DDD] Focus chain U [auth BBB] Focus chain V [auth BBB] Focus chain W [auth BBB] Interactions & Density Focus chain FA [auth CCC] Focus chain G [auth AAA] Focus chain GA [auth CCC] Focus chain H [auth AAA] Focus chain HA [auth CCC] Focus chain J [auth AAA] Focus chain N [auth AAA] Focus chain SA [auth DDD] Focus chain TA [auth DDD] Focus chain U [auth BBB] Focus chain V [auth BBB] Focus chain W [auth BBB]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain O [auth AAA] MOL2 format, chain O [auth AAA] mmCIF format, chain O [auth AAA]	O [auth AAA]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain O [auth AAA] Interactions & Density Focus chain O [auth AAA]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain AA [auth BBB] SDF format, chain CA [auth CCC] SDF format, chain DA [auth CCC] SDF format, chain EA [auth CCC] SDF format, chain F [auth AAA] SDF format, chain I [auth AAA] SDF format, chain IA [auth CCC] SDF format, chain JA [auth CCC] SDF format, chain K [auth AAA] SDF format, chain KA [auth CCC] SDF format, chain L [auth AAA] SDF format, chain LA [auth CCC] SDF format, chain MA [auth CCC] SDF format, chain NA [auth CCC] SDF format, chain P [auth AAA] SDF format, chain PA [auth DDD] SDF format, chain QA [auth DDD] SDF format, chain R [auth BBB] SDF format, chain T [auth BBB] SDF format, chain Y [auth BBB] SDF format, chain Z [auth BBB] SDF format, chain M [auth AAA] SDF format, chain S [auth BBB] MOL2 format, chain AA [auth BBB] MOL2 format, chain CA [auth CCC] MOL2 format, chain DA [auth CCC] MOL2 format, chain EA [auth CCC] MOL2 format, chain F [auth AAA] MOL2 format, chain I [auth AAA] MOL2 format, chain IA [auth CCC] MOL2 format, chain JA [auth CCC] MOL2 format, chain K [auth AAA] MOL2 format, chain KA [auth CCC] MOL2 format, chain L [auth AAA] MOL2 format, chain LA [auth CCC] MOL2 format, chain MA [auth CCC] MOL2 format, chain NA [auth CCC] MOL2 format, chain P [auth AAA] MOL2 format, chain PA [auth DDD] MOL2 format, chain QA [auth DDD] MOL2 format, chain R [auth BBB] MOL2 format, chain T [auth BBB] MOL2 format, chain Y [auth BBB] MOL2 format, chain Z [auth BBB] MOL2 format, chain M [auth AAA] MOL2 format, chain S [auth BBB] mmCIF format, chain AA [auth BBB] mmCIF format, chain CA [auth CCC] mmCIF format, chain DA [auth CCC] mmCIF format, chain EA [auth CCC] mmCIF format, chain F [auth AAA] mmCIF format, chain I [auth AAA] mmCIF format, chain IA [auth CCC] mmCIF format, chain JA [auth CCC] mmCIF format, chain K [auth AAA] mmCIF format, chain KA [auth CCC] mmCIF format, chain L [auth AAA] mmCIF format, chain LA [auth CCC] mmCIF format, chain MA [auth CCC] mmCIF format, chain NA [auth CCC] mmCIF format, chain P [auth AAA] mmCIF format, chain PA [auth DDD] mmCIF format, chain QA [auth DDD] mmCIF format, chain R [auth BBB] mmCIF format, chain T [auth BBB] mmCIF format, chain Y [auth BBB] mmCIF format, chain Z [auth BBB] mmCIF format, chain M [auth AAA] mmCIF format, chain S [auth BBB]	AA [auth BBB] CA [auth CCC] DA [auth CCC] EA [auth CCC] F [auth AAA] AA [auth BBB], CA [auth CCC], DA [auth CCC], EA [auth CCC], F [auth AAA], I [auth AAA], IA [auth CCC], JA [auth CCC], K [auth AAA], KA [auth CCC], L [auth AAA], LA [auth CCC], M [auth AAA], MA [auth CCC], NA [auth CCC], P [auth AAA], PA [auth DDD], QA [auth DDD], R [auth BBB], S [auth BBB], T [auth BBB], Y [auth BBB], Z [auth BBB]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain AA [auth BBB] Focus chain CA [auth CCC] Focus chain DA [auth CCC] Focus chain EA [auth CCC] Focus chain F [auth AAA] Focus chain I [auth AAA] Focus chain IA [auth CCC] Focus chain JA [auth CCC] Focus chain K [auth AAA] Focus chain KA [auth CCC] Focus chain L [auth AAA] Focus chain LA [auth CCC] Focus chain M [auth AAA] Focus chain MA [auth CCC] Focus chain NA [auth CCC] Focus chain P [auth AAA] Focus chain PA [auth DDD] Focus chain QA [auth DDD] Focus chain R [auth BBB] Focus chain S [auth BBB] Focus chain T [auth BBB] Focus chain Y [auth BBB] Focus chain Z [auth BBB] Interactions & Density Focus chain AA [auth BBB] Focus chain CA [auth CCC] Focus chain DA [auth CCC] Focus chain EA [auth CCC] Focus chain F [auth AAA] Focus chain I [auth AAA] Focus chain IA [auth CCC] Focus chain JA [auth CCC] Focus chain K [auth AAA] Focus chain KA [auth CCC] Focus chain L [auth AAA] Focus chain LA [auth CCC] Focus chain M [auth AAA] Focus chain MA [auth CCC] Focus chain NA [auth CCC] Focus chain P [auth AAA] Focus chain PA [auth DDD] Focus chain QA [auth DDD] Focus chain R [auth BBB] Focus chain S [auth BBB] Focus chain T [auth BBB] Focus chain Y [auth BBB] Focus chain Z [auth BBB]