8S7E | pdb_00008s7e

Cryo-EM structure of SKP1-FBXO22


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Dual BACH1 regulation by complementary SCF-type E3 ligases.

Goretzki, B.Khoshouei, M.Schroder, M.Penner, P.Egger, L.Stephan, C.Argoti, D.Dierlamm, N.Rada, J.M.Kapps, S.Muller, C.S.Thiel, Z.Mutlu, M.Tschopp, C.Furkert, D.Freuler, F.Haenni, S.Tenaillon, L.Knapp, B.Hinniger, A.Hoppe, P.Schmidt, E.Gutmann, S.Iurlaro, M.Ryzhakov, G.Fernandez, C.

(2024) Cell 187: 7585-7602.e25

  • DOI: https://doi.org/10.1016/j.cell.2024.11.006
  • Primary Citation of Related Structures:  
    8S7D, 8S7E, 9GP5, 9GR9, 9GRA

  • PubMed Abstract: 

    Broad-complex, tramtrack, and bric-à-brac domain (BTB) and CNC homolog 1 (BACH1) is a key regulator of the cellular oxidative stress response and an oncogene that undergoes tight post-translational control by two distinct F-box ubiquitin ligases, SCF FBXO22 and SCF FBXL17 . However, how both ligases recognize BACH1 under oxidative stress is unclear. In our study, we elucidate the mechanism by which FBXO22 recognizes a quaternary degron in a domain-swapped β-sheet of the BACH1 BTB dimer. Cancer-associated mutations and cysteine modifications destabilize the degron and impair FBXO22 binding but simultaneously expose an otherwise shielded degron in the dimer interface, allowing FBXL17 to recognize BACH1 as a monomer. These findings shed light on a ligase switch mechanism that enables post-translational regulation of BACH1 by complementary ligases depending on the stability of its BTB domain. Our results provide mechanistic insights into the oxidative stress response and may spur therapeutic approaches for targeting oxidative stress-related disorders and cancer.


  • Organizational Affiliation
    • Discovery Sciences, Novartis Biomedical Research, Basel, Switzerland. Electronic address: bengoretzki@isomorphiclabs.com.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
S-phase kinase-associated protein 1162Homo sapiensMutation(s): 0 
Gene Names: SKP1EMC19OCP2SKP1ATCEB1L
UniProt & NIH Common Fund Data Resources
Find proteins for P63208 (Homo sapiens)
Explore P63208 
Go to UniProtKB:  P63208
PHAROS:  P63208
GTEx:  ENSG00000113558 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63208
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
F-box only protein 22395Homo sapiensMutation(s): 0 
Gene Names: FBXO22FBX22
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NEZ5 (Homo sapiens)
Explore Q8NEZ5 
Go to UniProtKB:  Q8NEZ5
PHAROS:  Q8NEZ5
GTEx:  ENSG00000167196 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NEZ5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release
  • Version 1.1: 2025-07-02
    Changes: Data collection, Database references