Download MendeleyStructures of RNA phosphotransferase Tpt1 reveal distinct binding modes for an RNA 2'-PO 4 splice junction versus a 5'-PO 4 mononucleotide.
Jacewicz, A., Damha, M.J., Shuman, S.(2025) RNA 31: 916-922
- PubMed: 40324821
- DOI: https://doi.org/10.1261/rna.080444.125
- Primary Citation of Related Structures:
8TKB - PubMed Abstract:
Tpt1 is a widely distributed enzyme that removes an internal RNA 2'-phosphate by transfer to NAD + , via a two-step reaction in which: (i) the RNA 2'-PO 4 attacks NAD + to form an RNA-2'-phospho-(ADP-ribose) intermediate and expel nicotinamide; and (ii) the ADP-ribose O2″ attacks the RNA 2'-phosphodiester to form 2'-OH RNA and ADP-ribose-1″,2″-cyclic phosphate products. Tpt1 can also execute a single-step ADP-ribosyltransferase reaction at a 5'-monophosphate nucleic acid terminus that installs a 5'-phospho-ADP-ribose cap structure. Here we present crystal structures of Tpt1 bound to an RNA containing an internal 2'-PO 4 mark (the substrate for the canonical Tpt1 pathway) and in a complex with 5'-AMP. We find that Tpt1 has distinct binding modes, whereby the RNA 2'-PO 4 and the AMP 5'-PO 4 are engaged by the same set of active site amino acids, but the 2'-PO 4 nucleoside and the 5'-nucleoside occupy different sites on the enzyme.
- Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Organizational Affiliation:
