8UDH | pdb_00008udh

Crystal Structure of Mu class Glutathione-S-Transferase TuGSTm06(Tetur05g05220) in complex with reaction product

PDB DOI: https://doi.org/10.2210/pdb8UDH/pdb

Classification: TRANSFERASE/PRODUCT
Organism(s): Tetranychus urticae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-09-28 Released: 2025-03-19
Deposition Author(s): Khatri, K., Arriaza, R.H., Chruszcz, M.
Funding Organization(s): National Institute of Food and Agriculture (NIFA, United States)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.193 (Depositor), 0.203 (DCC)
R-Value Work:
0.172 (Depositor), 0.180 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal Structure of Mu class Glutathione-S-Transferase TuGSTm06(Tetur05g05220) in complex with reaction product

Khatri, K., Arriaza, R.H., Chruszcz, M.

To be published.

Macromolecule Content

Total Structure Weight: 54.6 kDa
Atom Count: 4,101
Modeled Residue Count: 446
Deposited Residue Count: 450
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione-S-Transferase	A, B	225	Tetranychus urticae	Mutation(s): 0 Gene Names: 107360789 EC: 2.5.1.18
UniProt
Find proteins for T1K569 (Tetranychus urticae) Explore T1K569 Go to UniProtKB: T1K569
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	T1K569
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
WK6 (Subject of Investigation/LOI) Query on WK6 Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain F [auth B] SDF format, chain H [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] MOL2 format, chain H [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B] mmCIF format, chain H [auth B]	C [auth A], D [auth A], F [auth B], H [auth B]	L-gamma-glutamyl-S-(benzylcarbamothioyl)-L-cysteinylglycine C₁₈ H₂₄ N₄ O₆ S₂ MGUPJNNTVYXHBZ-QWHCGFSZSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain F [auth B] Focus chain H [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain F [auth B] Focus chain H [auth B]
MLI Query on MLI Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain I [auth B] SDF format, chain J [auth B] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] mmCIF format, chain E [auth A] mmCIF format, chain G [auth B] mmCIF format, chain I [auth B] mmCIF format, chain J [auth B]	E [auth A], G [auth B], I [auth B], J [auth B]	MALONATE ION C₃ H₂ O₄ OFOBLEOULBTSOW-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain G [auth B] Focus chain I [auth B] Focus chain J [auth B] Interactions & Density Focus chain E [auth A] Focus chain G [auth B] Focus chain I [auth B] Focus chain J [auth B]