8V3V | pdb_00008v3v

ACAD11 D753N with 4-phosphovaleryl-CoA

  • Classification: OXIDOREDUCTASE
  • Organism(s): Mus musculus
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2023-11-28 Released: 2024-12-11 
  • Deposition Author(s): Zhang, J., Bartlett, A., Rashan, E., Yuan, P., Pagliarini, D.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK), Other private

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

ACAD10 and ACAD11 enable mammalian 4-hydroxy acid lipid catabolism.

Rashan, E.H.Bartlett, A.K.Khana, D.B.Zhang, J.Jain, R.Wade, G.Abriata, L.A.Smith, A.J.Baker, Z.N.Cook, T.Caldwell, A.Chevalier, A.R.Forny, P.Pfleger, B.F.Peraro, M.D.Yuan, P.Amador-Noguez, D.Simcox, J.A.Pagliarini, D.J.

(2025) Nat Struct Mol Biol 32: 1622-1632

  • DOI: https://doi.org/10.1038/s41594-025-01596-4
  • Primary Citation of Related Structures:  
    8V3U, 8V3V

  • PubMed Abstract: 

    Fatty acid β-oxidation is a central catabolic pathway with broad health implications. However, various fatty acids, including 4-hydroxy acids (4-HAs), are largely incompatible with β-oxidation machinery before being modified. Here we reveal that two atypical acyl-CoA dehydrogenases, ACAD10 and ACAD11, drive 4-HA catabolism in mice. Unlike other ACADs, ACAD10 and ACAD11 feature kinase domains that phosphorylate the 4-hydroxy position as a requisite step in converting 4-hydroxyacyl-CoAs into conventional 2-enoyl-CoAs. Through cryo-electron microscopy and molecular modeling, we identified an atypical dehydrogenase binding pocket capable of accommodating this phosphorylated intermediate. We further show that ACAD10 is mitochondrial and necessary for catabolizing shorter-chain 4-HAs, whereas ACAD11 is peroxisomal and enables longer-chain 4-HA catabolism. Mice lacking ACAD11 accumulate 4-HAs in their plasma and females are susceptible to body weight and fat gain, concurrent with decreased adipocyte differentiation and adipokine expression. Collectively, we present that ACAD10 and ACAD11 are the primary gatekeepers of mammalian 4-HA catabolism.


  • Organizational Affiliation
    • Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl-Coenzyme A dehydrogenase family, member 11
A, B, C, D
778Mus musculusMutation(s): 1 
Gene Names: Acad11
EC: 1.3.8
UniProt & NIH Common Fund Data Resources
Find proteins for Q80XL6 (Mus musculus)
Explore Q80XL6 
Go to UniProtKB:  Q80XL6
IMPC:  MGI:2143169
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ80XL6
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM131795
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01DK098672
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release
  • Version 1.1: 2025-07-02
    Changes: Data collection, Database references
  • Version 1.2: 2025-10-01
    Changes: Data collection, Database references