8WPM | pdb_00008wpm

Cryo-EM structure of the human TRPC1/C4 heteromer in complex with Pico145


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.43 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Cryo-EM structure of the heteromeric TRPC1/TRPC4 channel.

Won, J.Kim, J.Kim, J.Ko, J.Park, C.H.Jeong, B.Lee, S.E.Jeong, H.Kim, S.H.Park, H.So, I.Lee, H.H.

(2025) Nat Struct Mol Biol 32: 326-338

  • DOI: https://doi.org/10.1038/s41594-024-01408-1
  • Primary Citation of Related Structures:  
    8WPL, 8WPM, 8WPN

  • PubMed Abstract: 

    Transient receptor potential (TRP) ion channels have a crucial role as cellular sensors, mediating diverse physical and chemical stimuli. The formation of heteromeric structures expands the functionality of TRP channels; however, their molecular architecture remains largely unknown. Here we present the cryo-electron microscopy structures of the human TRPC1/TRPC4 heteromer in the apo and antagonist-bound states, both consisting of one TRPC1 subunit and three TRPC4 subunits. The heteromer structure reveals a distinct ion-conduction pathway, including an asymmetrically constricted selectivity filter and an asymmetric lower gate, primarily attributed to the incorporation of TRPC1. Through a structure-guided electrophysiological assay, we show that both the selectivity filter and the lower part of the S6 helix participate in deciding overall preference for permeating monovalent cations. Moreover, we reveal that the introduction of one lysine residue of TRPC1 into the tetrameric central cavity is enough to render one of the most important functional consequences of TRPC heteromerization: reduced calcium permeability. Our results establish a framework for addressing the structure-function relationship of the heteromeric TRP channels.


  • Organizational Affiliation
    • Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul, Republic of Korea.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Short transient receptor potential channel 1797Homo sapiensMutation(s): 0 
Gene Names: TRPC1TRP1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P48995 (Homo sapiens)
Explore P48995 
Go to UniProtKB:  P48995
PHAROS:  P48995
GTEx:  ENSG00000144935 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP48995
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Short transient receptor potential channel 4
B, C, D
915Homo sapiensMutation(s): 0 
Gene Names: TRPC4
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBN4 (Homo sapiens)
Explore Q9UBN4 
Go to UniProtKB:  Q9UBN4
PHAROS:  Q9UBN4
GTEx:  ENSG00000133107 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UBN4
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PJQ (Subject of Investigation/LOI)
Query on PJQ

Download Ideal Coordinates CCD File 
E [auth A],
G [auth B],
J [auth C],
M [auth D]
7-[(4-chlorophenyl)methyl]-3-methyl-1-(3-oxidanylpropyl)-8-[3-(trifluoromethyloxy)phenoxy]purine-2,6-dione
C23 H20 Cl F3 N4 O5
PRJHEJGMSOBHTO-UHFFFAOYSA-N
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
F [auth A],
H [auth B],
K [auth C],
N [auth D]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
I [auth B],
L [auth C],
O [auth D]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.43 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateKorea, Republic OfSSTF-BA2101-13

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-16
    Type: Initial release
  • Version 1.1: 2024-10-30
    Changes: Data collection
  • Version 1.2: 2024-11-06
    Changes: Data collection, Database references
  • Version 1.3: 2024-11-13
    Changes: Data collection, Database references
  • Version 1.4: 2025-03-05
    Changes: Data collection, Database references
  • Version 1.5: 2025-07-02
    Changes: Data collection