8WT0 | pdb_00008wt0

The toxin-antitoxin complex Fic-1-AntF is a deAMPylase that regulates the activity of DNA gyrase

PDB DOI: https://doi.org/10.2210/pdb8WT0/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Pseudomonas, Pseudomonas bijieensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-10-17 Released: 2024-10-23
Deposition Author(s): Chen, F.R., Guo, L.W., Lu, C.H., Jiang, W.J., Luo, Z.Q., Liu, J.F., Zhang, L.Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.269 (Depositor), 0.240 (DCC)
R-Value Work:
0.212 (Depositor), 0.230 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

The toxin-antitoxin complex Fic-1-AntF is a deAMPylase that regulates the activity of DNA gyrase

Chen, F.R., Guo, L.W., Lu, C.H., Jiang, W.J., Luo, Z.Q., Liu, J.F., Zhang, L.Q.

To be published.

Macromolecule Content

Total Structure Weight: 31.15 kDa
Atom Count: 1,835
Modeled Residue Count: 225
Deposited Residue Count: 267
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell filamentation protein Fic	A	205	Pseudomonas	Mutation(s): 0 EC: 2.7.7.108
UniProt
Find proteins for A0A6N1CCF7 (Pseudomonas bijieensis) Explore A0A6N1CCF7 Go to UniProtKB: A0A6N1CCF7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A6N1CCF7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DUF2559 domain-containing protein	B	62	Pseudomonas bijieensis	Mutation(s): 0 Gene Names: GN234_08370
UniProt
Find proteins for A0A6N1CBH0 (Pseudomonas bijieensis) Explore A0A6N1CBH0 Go to UniProtKB: A0A6N1CBH0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A6N1CBH0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PG4 (Subject of Investigation/LOI) Query on PG4 Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
TAR (Subject of Investigation/LOI) Query on TAR Download Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A] mmCIF format, chain D [auth A]	D [auth A]	D(-)-TARTARIC ACID C₄ H₆ O₆ FEWJPZIEWOKRBE-LWMBPPNESA-N		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]
SO4 (Subject of Investigation/LOI) Query on SO4 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain F [auth A]	F [auth A], G [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain F [auth A] Focus chain G [auth A] Interactions & Density Focus chain F [auth A] Focus chain G [auth A]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]