8YVH | pdb_00008yvh

NADPH complex of Imine Reductase Mutant(M6) from Pochonia chlamydosporia 170

• PDB DOI: https://doi.org/10.2210/pdb8YVH/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Pochonia chlamydosporia 170
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-03-28 Released: 2025-04-02 
• Deposition Author(s): Shi, M., zheng, G.W.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.241 (Depositor), 0.247 (DCC) 
• R-Value Work: 
  0.167 (Depositor), 0.175 (DCC) 
• R-Value Observed: 
  0.171 (Depositor) 

Starting Model: in silico

Literature

NADPH complex of Imine Reductase Mutant(M6) from Pochonia chlamydosporia 170

Shi, M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 67.27 kDa 
• Atom Count: 4,782 
• Modeled Residue Count: 580 
• Deposited Residue Count: 626 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxidoreductase	A, B	313	Pochonia chlamydosporia 170	Mutation(s): 0  Gene Names: VFPPC_03305
UniProt
Find proteins for A0A179FZ20 (Pochonia chlamydosporia 170) Explore A0A179FZ20  Go to UniProtKB:  A0A179FZ20

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAP (Subject of Investigation/LOI)	C [auth A], E [auth B]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N
TRS	D [auth A]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.241 (Depositor), 0.247 (DCC) 
• R-Value Work:  0.167 (Depositor), 0.175 (DCC) 
• R-Value Observed: 0.171 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.398	α = 90
b = 117.95	β = 100.89
c = 63.529	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SAINT	data scaling
SAINT	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-04-02 
Deposition Author(s): Shi, M., zheng, G.W.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2025-04-02
  Type: Initial release
  
• Version 2.0: 2025-04-16
  Changes: Advisory, Atomic model, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary