9FM6 | pdb_00009fm6

Aerolysin Wildtype in styrene-maleic acid lipid particles


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Aerolysin Nanopore Structures Revealed at High Resolution in a Lipid Environment.

Anton, J.S.Iacovache, I.Bada Juarez, J.F.Abriata, L.A.Perrin, L.W.Cao, C.Marcaida, M.J.Zuber, B.Dal Peraro, M.

(2025) J Am Chem Soc 147: 4984-4992

  • DOI: https://doi.org/10.1021/jacs.4c14288
  • Primary Citation of Related Structures:  
    9FM6, 9FML, 9FMX, 9FNP, 9FNQ

  • PubMed Abstract: 

    Aerolysin is a β-pore-forming toxin produced by most Aeromonas bacteria, which has attracted large attention in the field of nanopore sensing due to its narrow and charged pore lumen. Structurally similar proteins, belonging to the aerolysin-like family, are present throughout all kingdoms of life, but very few of them have been structurally characterized in a lipid environment. Here, we present the first high-resolution atomic cryo-EM structures of aerolysin prepore and pore in a membrane-like environment. These structures allow the identification of key interactions, which are relevant for understanding the pore formation mechanism and for correctly positioning the pore β-barrel and its anchoring β-turn motif in the membrane. Moreover, we elucidate at high resolution the architecture of key pore mutations and precisely identify four constriction rings in the pore lumen that are highly relevant for nanopore sensing experiments.


  • Organizational Affiliation
    • Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aerolysin
A, B, C, D, E
A, B, C, D, E, F, G
424Aeromonas hydrophilaMutation(s): 0 
Gene Names: aerA
UniProt
Find proteins for P09167 (Aeromonas hydrophila)
Explore P09167 
Go to UniProtKB:  P09167
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09167
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland200021L_212128

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-12
    Type: Initial release
  • Version 1.1: 2025-02-19
    Changes: Data collection, Database references
  • Version 1.2: 2025-07-02
    Changes: Data collection