9M0S | pdb_00009m0s

Acetyl-CoA-bound SLC33A1 in a cytoplasm-facing conformation

PDB DOI: https://doi.org/10.2210/pdb9M0S/pdb
EM Map EMD-63562: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes MemProtMD

Deposited: 2025-02-25 Released: 2025-04-23
Deposition Author(s): Zhou, D., Zhang, Z.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Mechanistic insights into the acetyl-CoA recognition by SLC33A1.

Zhou, D., Chen, N., Huang, S., Song, C., Zhang, Z.

(2025) Cell Discov 11: 36-36

PubMed: 40204708 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-025-00793-1
Primary Citation of Related Structures:
9M0S

Organizational Affiliation

State Key Laboratory of Membrane Biology, School of Life Sciences, Peking University, Beijing, China.

Macromolecule Content

Total Structure Weight: 62.94 kDa
Atom Count: 3,413
Modeled Residue Count: 424
Deposited Residue Count: 560
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-coenzyme A transporter 1	A	560	Homo sapiens	Mutation(s): 0 Gene Names: SLC33A1, ACATN, AT1 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for O00400 (Homo sapiens) Explore O00400 Go to UniProtKB: O00400
PHAROS: O00400 GTEx: ENSG00000169359
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O00400
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO (Subject of Investigation/LOI) Query on ACO Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21_5207:

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-04-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	32471252

Revision History (Full details and data files)

Version 1.0: 2025-04-23
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.