9QB3 | pdb_00009qb3

Dimer structure of H/ACA RNP lobe of human telomerase


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure of human telomerase dimer reveals H/ACA RNP-mediated dimerization.

Balch, S.Sekne, Z.Franco-Echevarria, E.Ludzia, P.Kretsch, R.C.Sun, W.Yu, H.Ghanim, G.E.Thorkelsson, S.Ding, Y.Das, R.Nguyen, T.H.D.

(2025) Science 389: eadr5817-eadr5817

  • DOI: https://doi.org/10.1126/science.adr5817
  • Primary Citation of Related Structures:  
    9QAX, 9QAY, 9QAZ, 9QB2, 9QB3

  • PubMed Abstract: 

    Telomerase ribonucleoprotein (RNP) synthesizes telomeric repeats at chromosome ends using a telomerase reverse transcriptase (TERT) and a telomerase RNA (hTR in humans). Previous structural work showed that human telomerase is typically monomeric, containing a single copy of TERT and hTR. Evidence for dimeric complexes exists, although the composition, high-resolution structure, and function remain elusive. Here, we report the cryo-electron microscopy (cryo-EM) structure of a human telomerase dimer bound to telomeric DNA. The structure reveals a 26-subunit assembly and a dimerization interface mediated by the Hinge and ACA box (H/ACA) RNP of telomerase. Premature aging disease mutations map to this interface. Disrupting dimer formation affects RNP assembly, bulk telomerase activity, and telomere maintenance in cells. Our findings address a long-standing enigma surrounding the telomerase dimer and suggest a role for the dimer in telomerase assembly.


  • Organizational Affiliation
    • MRC Laboratory of Molecular Biology, Cambridge, UK.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
H/ACA ribonucleoprotein complex subunit DKC1A [auth C],
E [auth G],
J [auth c],
N [auth g]
514Homo sapiensMutation(s): 0 
EC: 5.4.99
UniProt & NIH Common Fund Data Resources
Find proteins for O60832 (Homo sapiens)
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Go to UniProtKB:  O60832
PHAROS:  O60832
GTEx:  ENSG00000130826 
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UniProt GroupO60832
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
H/ACA ribonucleoprotein complex subunit 1B [auth D],
F [auth H],
K [auth d],
O [auth h]
217Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NY12 (Homo sapiens)
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PHAROS:  Q9NY12
GTEx:  ENSG00000109534 
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UniProt GroupQ9NY12
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
H/ACA ribonucleoprotein complex subunit 2C [auth E],
G [auth I],
L [auth e],
P [auth i]
153Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NX24 (Homo sapiens)
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PHAROS:  Q9NX24
GTEx:  ENSG00000145912 
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UniProt GroupQ9NX24
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
H/ACA ribonucleoprotein complex subunit 3D [auth F],
H [auth J],
M [auth f],
Q [auth j]
64Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NPE3 (Homo sapiens)
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PHAROS:  Q9NPE3
GTEx:  ENSG00000182117 
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UniProt GroupQ9NPE3
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase Cajal body protein 1I [auth K],
R [auth k]
548Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BUR4 (Homo sapiens)
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PHAROS:  Q9BUR4
GTEx:  ENSG00000141499 
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UniProt GroupQ9BUR4
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Entity ID: 6
MoleculeChains LengthOrganismImage
hTR, human telomerase RNAS [auth B],
T [auth b]
451Homo sapiens
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5.0
MODEL REFINEMENTREFMAC5.8
MODEL REFINEMENTServalcat0.4.70

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
UK Research and Innovation (UKRI)United KingdomMC_UP_1201/19
Jane Coffin Childs (JCC) FundUnited States--
European Molecular Biology Organization (EMBO)European Union--
Wellcome TrustUnited Kingdom226015/Z/22/Z
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States2R35GM122579
Howard Hughes Medical Institute (HHMI)United States--
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/X01102X/1
Chinese Scholarship CouncilChina202206620047
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/X01102X/1

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release
  • Version 1.1: 2025-07-23
    Changes: Data collection, Database references