9V0U | pdb_00009v0u

GPR133-Gain-miniG13 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.51 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Cryo-EM structural elucidation and molecular mechanism of the GPR133-G13 signaling complex.

Pu, X.Xi, Y.T.Wang, M.X.Zhang, D.Ping, Y.Q.Xiao, P.Sun, J.P.

(2025) Biochem Biophys Res Commun 777: 152165-152165

  • DOI: https://doi.org/10.1016/j.bbrc.2025.152165
  • Primary Citation of Related Structures:  
    9V0U

  • PubMed Abstract: 

    GPR133 is an adhesion-class G protein-coupled receptor (GPCR) that has recently been de-orphanized. Its functions are complex and multifaceted. While GPR133 is primarily recognized for coupling with the Gs subunit to mediate elevated intracellular cAMP levels, its potential engagement with alternative signaling pathways remains poorly characterized. In our experiments, we demonstrated that GPR133 exhibits constitutive self-activation via its Stachel sequence as an adhesion GPCR, enabling activation of downstream G13 signaling. We reconstituted the GPR133-GAIN-miniGα13 complex in vitro and resolved its cryo-electron microscopy structure at a resolution of 3.51 Å. Detailed structural comparisons between the GPR133-GAIN-miniGα13 complex and the previously resolved GPR133-CTF-Gs structure highlighted both conserved and different features. These findings provide critical insights into the signal transduction mechanisms of GPR133 and lay a foundation for targeted therapeutic strategies.


  • Organizational Affiliation
    • School of Pharmacy, Binzhou Medical University, 264003, Yantai, China; Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, 250012, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Adhesion G-protein coupled receptor D1A [auth R]598Homo sapiensMutation(s): 0 
Gene Names: ADGRD1GPR133PGR25
Membrane Entity: Yes 
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Find proteins for Q6QNK2 (Homo sapiens)
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PHAROS:  Q6QNK2
GTEx:  ENSG00000111452 
Entity Groups  
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UniProt GroupQ6QNK2
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein subunit alpha-13,Isoform 2 of Guanine nucleotide-binding protein subunit alpha-13B [auth A]231Homo sapiensMutation(s): 0 
Gene Names: GNA13
Membrane Entity: Yes 
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Find proteins for Q14344 (Homo sapiens)
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PHAROS:  Q14344
GTEx:  ENSG00000120063 
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UniProt GroupQ14344
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1D [auth C]344Homo sapiensMutation(s): 0 
Gene Names: GNB1
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Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.51 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32222038

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-30
    Type: Initial release