1DZF
RPB5 from S.cerevisiae
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1dzfa1 | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Eukaryotic RPB5 N-terminal domain | Eukaryotic RPB5 N-terminal domain | Eukaryotic RPB5 N-terminal domain | BAKER'S YEAST (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ], | SCOPe (2.08) |
A | d1dzfa2 | Alpha and beta proteins (a+b) | RPB5-like RNA polymerase subunit | RPB5-like RNA polymerase subunit | RPB5 | Eukaryotic RPB5 C-terminal domain | BAKER'S YEAST (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | RPB5 | 8023559 | 4001502 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Eukaryotic RPB5 N-terminal domain | 8032076 | 4000501 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RPB5-like RNA polymerase subunit | 8035939 | 3001722 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Eukaryotic RPB5 N-terminal domain | 8044454 | 3000444 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01191 | e1dzfA1 | A: a+b two layers | X: RPB5-like RNA polymerase subunit (From Topology) | H: RPB5-like RNA polymerase subunit (From Topology) | T: RPB5-like RNA polymerase subunit | F: PF01191 | ECOD (1.6) |
A | PF03871 | e1dzfA2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Eukaryotic RPB5 N-terminal domain (From Topology) | T: Eukaryotic RPB5 N-terminal domain | F: PF03871 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1340.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide | Chain: A | CATH (4.3.0) |
A | 3.90.940.20 | Alpha Beta | Alpha-Beta Complex | Eukaryotic RPB6 RNA polymerase subunit | RPB5-like RNA polymerase subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01191 | RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C) | RNA polymerase Rpb5, C-terminal domain | The assembly domain of Rpb5 [1]. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain. | Domain | |
PF03871 | RNA polymerase Rpb5, N-terminal domain (RNA_pol_Rpb5_N) | RNA polymerase Rpb5, N-terminal domain | Rpb5 has a bipartite structure which includes a eukaryote-specific N-terminal domain and a C-terminal domain resembling the archaeal RNAP subunit H [1,2]. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA p ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036710 | RNA polymerase Rpb5, N-terminal domain superfamily | Homologous Superfamily | |
IPR014381 | DNA-directed RNA polymerase subunit Rpo5/Rpb5 | Family | |
IPR035913 | RPB5-like RNA polymerase subunit superfamily | Homologous Superfamily | |
IPR000783 | RNA polymerase, subunit H/Rpb5 C-terminal | Domain | |
IPR020608 | RNA polymerase, subunit H/Rpb5, conserved site | Conserved Site | |
IPR005571 | RNA polymerase, Rpb5, N-terminal | Domain |