1LTL | pdb_00001ltl

THE DODECAMER STRUCTURE OF MCM FROM ARCHAEAL M. THERMOAUTOTROPHICUM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ltla_	All beta proteins	OB-fold	Nucleic acid-binding proteins	DNA replication initiator (cdc21/cdc54) N-terminal domain	DNA replication initiator (cdc21/cdc54) N-terminal domain	(Methanothermobacter thermautotrophicus ) [TaxId: 145262 ],	SCOPe (2.08)
B	d1ltlb_	All beta proteins	OB-fold	Nucleic acid-binding proteins	DNA replication initiator (cdc21/cdc54) N-terminal domain	DNA replication initiator (cdc21/cdc54) N-terminal domain	(Methanothermobacter thermautotrophicus ) [TaxId: 145262 ],	SCOPe (2.08)
C	d1ltlc_	All beta proteins	OB-fold	Nucleic acid-binding proteins	DNA replication initiator (cdc21/cdc54) N-terminal domain	DNA replication initiator (cdc21/cdc54) N-terminal domain	(Methanothermobacter thermautotrophicus ) [TaxId: 145262 ],	SCOPe (2.08)
D	d1ltld_	All beta proteins	OB-fold	Nucleic acid-binding proteins	DNA replication initiator (cdc21/cdc54) N-terminal domain	DNA replication initiator (cdc21/cdc54) N-terminal domain	(Methanothermobacter thermautotrophicus ) [TaxId: 145262 ],	SCOPe (2.08)
E	d1ltle_	All beta proteins	OB-fold	Nucleic acid-binding proteins	DNA replication initiator (cdc21/cdc54) N-terminal domain	DNA replication initiator (cdc21/cdc54) N-terminal domain	(Methanothermobacter thermautotrophicus ) [TaxId: 145262 ],	SCOPe (2.08)
F	d1ltlf_	All beta proteins	OB-fold	Nucleic acid-binding proteins	DNA replication initiator (cdc21/cdc54) N-terminal domain	DNA replication initiator (cdc21/cdc54) N-terminal domain	(Methanothermobacter thermautotrophicus ) [TaxId: 145262 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DNA replication initiator (cdc21/cdc54) N-terminal domain	8020202	4003941	SCOP2 (2022-06-29)
A	SCOP2 Family	MCM Zinc-binding domain-like	8091433	4007741	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RNA polymerase subunits	8091434	3001823	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	RNA polymerase subunits	8091434	3001823	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RNA polymerase subunits	8091434	3001823	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RNA polymerase subunits	8091434	3001823	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RNA polymerase subunits	8091434	3001823	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RNA polymerase subunits	8091434	3001823	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nucleic acid-binding proteins	8032582	3000135	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MCM_OB	e1ltlA1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: MCM_OB	ECOD (1.6)
A	MCM_N	e1ltlA2	A: a+b complex topology	X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	F: MCM_N	ECOD (1.6)
A	MCM_OB_1	e1ltlA3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: MCM_OB_1	ECOD (1.6)
B	MCM_OB	e1ltlB1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: MCM_OB	ECOD (1.6)
B	MCM_N	e1ltlB2	A: a+b complex topology	X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	F: MCM_N	ECOD (1.6)
B	MCM_OB_1	e1ltlB3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: MCM_OB_1	ECOD (1.6)
C	MCM_OB	e1ltlC1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: MCM_OB	ECOD (1.6)
C	MCM_N	e1ltlC2	A: a+b complex topology	X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	F: MCM_N	ECOD (1.6)
C	MCM_OB_1	e1ltlC3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: MCM_OB_1	ECOD (1.6)
D	MCM_OB	e1ltlD1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: MCM_OB	ECOD (1.6)
D	MCM_N	e1ltlD2	A: a+b complex topology	X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	F: MCM_N	ECOD (1.6)
D	MCM_OB_1	e1ltlD3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: MCM_OB_1	ECOD (1.6)
E	MCM_OB	e1ltlE1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: MCM_OB	ECOD (1.6)
E	MCM_N	e1ltlE2	A: a+b complex topology	X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	F: MCM_N	ECOD (1.6)
E	MCM_OB_1	e1ltlE3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: MCM_OB_1	ECOD (1.6)
F	MCM_OB	e1ltlF1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: MCM_OB	ECOD (1.6)
F	MCM_N	e1ltlF2	A: a+b complex topology	X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology)	T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)	F: MCM_N	ECOD (1.6)
F	MCM_OB_1	e1ltlF3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: MCM_OB_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1640.10	Alpha Beta	2-Layer Sandwich	mini-chromosome maintenance (MCM) complex, chain A, domain 1	mini-chromosome maintenance (MCM) complex, chain A, domain 1	CATH (4.3.0)
A	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
A	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)
B	3.30.1640.10	Alpha Beta	2-Layer Sandwich	mini-chromosome maintenance (MCM) complex, chain A, domain 1	mini-chromosome maintenance (MCM) complex, chain A, domain 1	CATH (4.3.0)
B	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
B	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)
C	3.30.1640.10	Alpha Beta	2-Layer Sandwich	mini-chromosome maintenance (MCM) complex, chain A, domain 1	mini-chromosome maintenance (MCM) complex, chain A, domain 1	CATH (4.3.0)
C	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
C	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)
D	3.30.1640.10	Alpha Beta	2-Layer Sandwich	mini-chromosome maintenance (MCM) complex, chain A, domain 1	mini-chromosome maintenance (MCM) complex, chain A, domain 1	CATH (4.3.0)
D	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
D	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)
E	3.30.1640.10	Alpha Beta	2-Layer Sandwich	mini-chromosome maintenance (MCM) complex, chain A, domain 1	mini-chromosome maintenance (MCM) complex, chain A, domain 1	CATH (4.3.0)
E	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
E	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)
F	3.30.1640.10	Alpha Beta	2-Layer Sandwich	mini-chromosome maintenance (MCM) complex, chain A, domain 1	mini-chromosome maintenance (MCM) complex, chain A, domain 1	CATH (4.3.0)
F	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
F	2.20.28.10	Mainly Beta	Single Sheet	Rubrerythrin, domain 2		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF14551	MCM N-terminal domain (MCM_N)	MCM N-terminal domain	This family contains the N-terminal domain of MCM proteins.	Domain
A, B, C, D, E A, B, C, D, E, F	PF17207	MCM OB domain (MCM_OB)	MCM OB domain	This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	DNA replication initiator (Cdc21/Cdc54)	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleic acid conformation isomerase activity isomerase activity DNA helicase activity catalytic activity, acting on a nucleic acid single-stranded DNA helicase activity helicase activity ATP-dependent activity ATP-dependent activity, acting on DNA catalytic activity, acting on DNA catalytic activity macromolecular conformation isomerase activity hydrolase activity cation binding metal ion binding DNA binding single-stranded DNA binding nucleic acid binding	nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication DNA replication initiation metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	protein-containing complex MCM complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR027925	MCM, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR031327	Mini-chromosome maintenance protein	Family
A, B, C, D, E A, B, C, D, E, F	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR048907	MCM, winged-helix	Domain
A, B, C, D, E A, B, C, D, E, F	IPR008047	Mini-chromosome maintenance complex protein 4	Family
A, B, C, D, E A, B, C, D, E, F	IPR033762	MCM OB domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001208	MCM domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR041562	MCM, AAA-lid domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.