1ZMI | pdb_00001zmi

Crystal structure of human alpha_defensin-2 (variant GLY16->D-ALA), P 32 2 1 space group )


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd1zmid_ Small proteins Defensin-like Defensin-like Defensin automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd1zmic_ Small proteins Defensin-like Defensin-like Defensin automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1zmib_ Small proteins Defensin-like Defensin-like Defensin automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad1zmia_ Small proteins Defensin-like Defensin-like Defensin automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyDefensin-like 8038591 3000681 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDefensin-like 8038591 3000681 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDefensin-like 8038591 3000681 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDefensin-like 8038591 3000681 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DDefensin_1e1zmiD1 A: few secondary structure elementsX: Defensin-likeH: Defensin-relatedT: Defensin-relatedF: Defensin_1ECOD (1.6)
CDefensin_1e1zmiC1 A: few secondary structure elementsX: Defensin-likeH: Defensin-relatedT: Defensin-relatedF: Defensin_1ECOD (1.6)
BDefensin_1e1zmiB1 A: few secondary structure elementsX: Defensin-likeH: Defensin-relatedT: Defensin-relatedF: Defensin_1ECOD (1.6)
ADefensin_1e1zmiA1 A: few secondary structure elementsX: Defensin-likeH: Defensin-relatedT: Defensin-relatedF: Defensin_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00323Mammalian defensin (Defensin_1)Mammalian defensinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Neutrophil defensin 2

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B, C, D
PharosP59666

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, C, D
DAL RESIDAA0111 , AA0191

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862