2KSP | pdb_00002ksp

Mechanism for the selective interaction of C-terminal EH-domain proteins with specific NPF-containing partners

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2kspa1	All alpha proteins	EF Hand-like	EF-hand	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2kspa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	EF-hand	8065536	3001983	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EF-hand_4	e2kspA1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF12763	EH domain (EH)	EH domain	This entry represents the EH domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	EH domain-containing protein 1	small GTPase binding protein binding binding enzyme binding GTPase binding cation binding ion binding calcium ion binding metal ion binding small molecule binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding small GTPase binding protein binding binding enzyme binding GTPase binding cation binding ion binding calcium ion binding metal ion binding small molecule binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding adenyl ribonucleotide binding adenyl nucleotide binding ATP binding cell adhesion molecule binding cadherin binding identical protein binding	localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport protein localization to cell periphery cellular localization protein localization to plasma membrane localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport protein localization to cell periphery cellular localization protein localization to plasma membrane localization within membrane protein localization to membrane sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis regulation of localization regulation of cellular process positive regulation of biological process endocytic recycling establishment of localization in cell positive regulation of intracellular transport regulation of endocytic recycling positive regulation of cellular process regulation of intracellular transport regulation of biological process regulation of transport positive regulation of endocytic recycling biological regulation intracellular transport regulation of vesicle-mediated transport endosomal transport vesicle-mediated transport to the plasma membrane positive regulation of transport regulation of cellular localization cellular response to endogenous stimulus cellular response to growth factor stimulus response to stimulus response to endogenous stimulus cellular response to nerve growth factor stimulus response to nerve growth factor response to growth factor organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly regulation of neuron projection development multicellular organismal process regulation of cellular component organization positive regulation of cellular component organization cellular developmental process cell development neuron projection development neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization system development developmental process regulation of cell projection organization nervous system development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization cholesterol storage lipid storage lipid localization positive regulation of lipid localization regulation of lipid storage regulation of lipid localization positive regulation of cholesterol storage nutrient storage regulation of cholesterol storage positive regulation of lipid storage establishment of protein localization nitrogen compound transport protein transport intracellular protein transport regulation of syncytium formation by plasma membrane fusion regulation of developmental process cell-cell fusion muscle cell differentiation myotube differentiation positive regulation of developmental process muscle structure development syncytium formation positive regulation of myoblast fusion myoblast fusion regulation of myoblast fusion positive regulation of syncytium formation by plasma membrane fusion syncytium formation by plasma membrane fusion anatomical structure morphogenesis anatomical structure formation involved in morphogenesis striated muscle cell differentiation protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization plasma lipoprotein particle clearance low-density lipoprotein particle clearance regulation of plasma lipoprotein particle levels	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection presynapse synapse cell junction presynaptic active zone membrane extracellular exosome extracellular vesicle extracellular organelle membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection presynapse synapse cell junction presynaptic active zone membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cell periphery plasma membrane ciliary membrane ciliary pocket membrane ciliary pocket bounding membrane of organelle plasma membrane region organelle membrane cell projection membrane intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cytoplasm endocytic vesicle glutamatergic synapse early endosome endosome endomembrane system platelet dense tubular network platelet dense tubular network membrane endosome membrane recycling endosome cytoplasmic vesicle membrane recycling endosome membrane vesicle membrane early endosome membrane lipid droplet membraneless organelle intracellular membraneless organelle perinuclear region of cytoplasm
B	MICAL L1 like peptide	small GTPase binding protein binding binding enzyme binding GTPase binding ion binding anion binding phosphatidic acid binding phospholipid binding lipid binding small molecule binding protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding small GTPase binding protein binding binding enzyme binding GTPase binding ion binding anion binding phosphatidic acid binding phospholipid binding lipid binding small molecule binding protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding cadherin binding cytoskeletal anchor activity cation binding metal ion binding identical protein binding	localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport protein localization to endosome establishment of protein localization nitrogen compound transport localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport protein localization to endosome establishment of protein localization nitrogen compound transport protein transport developmental process multicellular organismal process cell migration involved in sprouting angiogenesis blood vessel morphogenesis tube development endothelial cell migration angiogenesis sprouting angiogenesis vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development blood vessel endothelial cell migration cell migration cell motility blood vessel development system development cellular localization establishment of protein localization to membrane protein targeting localization within membrane protein targeting to membrane organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly plasma membrane tubulation membrane organization plasma membrane organization endomembrane system organization intracellular transport endocytic recycling endosomal transport vesicle-mediated transport to the plasma membrane establishment of localization in cell slow endocytic recycling cellular developmental process cell development neuron projection development nervous system development generation of neurons neurogenesis neuron differentiation cell differentiation neuron development receptor-mediated endocytosis	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton endosome membrane endosome membrane intracellular vesicle late endosome membrane intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane late endosome cytoplasm vesicle organelle membrane cytoplasmic side of membrane cytoplasmic side of endosome membrane side of membrane plasma membrane ciliary membrane cell periphery plasma membrane region cell projection membrane cell-cell junction adherens junction anchoring junction cell junction recycling endosome recycling endosome membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000261	EH domain	Domain
A	IPR045063	Dynamin, N-terminal	Domain
A	IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	Domain
A	IPR040990	Domain of unknown function DUF5600	Domain
A	IPR002048	EF-hand domain	Domain
A	IPR011992	EF-hand domain pair	Homologous Superfamily
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A	IPR031692	EH domain-containing protein, N-terminal	Domain
B	IPR050540	F-actin Monooxygenase Mical	Family
B	IPR001715	Calponin homology domain	Domain
B	IPR022735	bMERB domain	Domain
B	IPR001781	Zinc finger, LIM-type	Domain
B	IPR036872	CH domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9H4M9	adenoma gout lung carcinoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma psoriasis gastric carcinoma large cell medulloblastoma malignant ependymoma osteosarcoma pilocytic astrocytoma tuberculosis glioblastoma lung cancer malignant glioma adenoma gout lung carcinoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma psoriasis gastric carcinoma large cell medulloblastoma malignant ependymoma osteosarcoma pilocytic astrocytoma tuberculosis glioblastoma lung cancer malignant glioma ovarian cancer polycystic ovary syndrome ulcerative colitis
B	Pharos: Q8N3F8	esophageal adenocarcinoma lung cancer Malignant neoplasm of breast ovarian cancer rheumatoid arthritis gastric carcinoma malignant ependymoma medulloblastoma primitive neuroectodermal tumor glioblastoma malignant glioma non-small cell lung carcinoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.