2V4E | pdb_00002v4e

A non-cytotoxic DsRed variant for whole-cell labeling

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2v4eh_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ],	SCOPe (2.08)
G	d2v4eg_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ],	SCOPe (2.08)
F	d2v4ef_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ],	SCOPe (2.08)
E	d2v4ee_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ],	SCOPe (2.08)
D	d2v4ed_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ],	SCOPe (2.08)
C	d2v4ec_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ],	SCOPe (2.08)
B	d2v4eb_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ],	SCOPe (2.08)
A	d2v4ea_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	SEA ANEMONE 111 (Discosoma sp. ) [TaxId: 86600 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	GFP-like	8034842	3000576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8034842	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8034842	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8034842	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8034842	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8034842	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8034842	3000576	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GFP-like	8034842	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	GFP	e2v4eH1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
G	GFP	e2v4eG1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
F	GFP	e2v4eF1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
E	GFP	e2v4eE1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
D	GFP	e2v4eD1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
C	GFP	e2v4eC1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
B	GFP	e2v4eB1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
A	GFP	e2v4eA1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D, E, F, G C, D, E, F, G, H	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain
B	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain
A	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D, E, F, G C, D, E, F, G, H	RED FLUORESCENT PROTEIN DRFP583	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-
B	RED FLUORESCENT PROTEIN DRFP583	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-
A	RED FLUORESCENT PROTEIN DRFP583	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D, E, F, G C, D, E, F, G, H	IPR000786	Green fluorescent protein, GFP	Family
C, D, E, F, G C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
C, D, E, F, G C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily
B	IPR000786	Green fluorescent protein, GFP	Family
B	IPR011584	Green fluorescent protein-related	Family
B	IPR009017	Green fluorescent protein	Homologous Superfamily
A	IPR000786	Green fluorescent protein, GFP	Family
A	IPR011584	Green fluorescent protein-related	Family
A	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C, D, E, F, G C, D, E, F, G, H	NRQ	Parent Component: MET, TYR, GLY RESID: AA0379 PSI-MOD : 2-imino-methionine 5-imidazolinone glycine MOD:00384
B	NRQ	Parent Component: MET, TYR, GLY RESID: AA0379 , AA0379 PSI-MOD : 2-imino-methionine 5-imidazolinone glycine MOD:00384 , 2-imino-methionine 5-imidazolinone glycine MOD:00384
A	NRQ	Parent Component: MET, TYR, GLY RESID: AA0379 , AA0379 , AA0379 PSI-MOD : 2-imino-methionine 5-imidazolinone glycine MOD:00384 , 2-imino-methionine 5-imidazolinone glycine MOD:00384 , 2-imino-methionine 5-imidazolinone glycine MOD:00384

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.