2ISS
Structure of the PLP synthase Holoenzyme from Thermotoga maritima
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2 Family | Class I glutamine amidotransferases (GAT) | 8080557 | 4003747 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Class I glutamine amidotransferase-like | 8080558 | 3001405 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8080558 | 3001405 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8080558 | 3001405 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01680 | e2issA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01680 | ECOD (1.6) |
B | PF01680 | e2issB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01680 | ECOD (1.6) |
C | PF01680 | e2issC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01680 | ECOD (1.6) |
D | PF01174 | e2issD1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: PF01174 | ECOD (1.6) |
E | PF01174 | e2issE1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: PF01174 | ECOD (1.6) |
F | PF01174 | e2issF1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: PF01174 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
B | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
C | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
D | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
E | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
F | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01680 | SOR/SNZ family (SOR_SNZ) | SOR/SNZ family | Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis [1]. This family was formerly known as UPF0019. | Domain | |
PF01174 | SNO glutamine amidotransferase family (SNO) | SNO glutamine amidotransferase family | This family and its amidotransferase domain was first described in [1]. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011060 | Ribulose-phosphate binding barrel | Homologous Superfamily | |
IPR001852 | Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ | Family | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR033755 | PdxS/SNZ N-terminal domain | Domain | |
IPR029062 | Class I glutamine amidotransferase-like | Homologous Superfamily | |
IPR002161 | Pyridoxal 5'-phosphate synthase subunit PdxT/SNO | Family | |
IPR021196 | PdxT/SNO family, conserved site | Conserved Site |