2PHN

Crystal structure of an amide bond forming F420-gamma glutamyl ligase from Archaeoglobus fulgidus

Present annotations:

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Product Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2phna_	Alpha and beta proteins (a+b)	CofE-like	CofE-like	CofE-like	F420-0:gamma-glutamyl ligase CofE	(Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ],	SCOPe (2.08)
B	d2phnb_	Alpha and beta proteins (a+b)	CofE-like	CofE-like	CofE-like	F420-0:gamma-glutamyl ligase CofE	(Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CofE-like	8031505	4000423	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CofE-like	8043883	3000257	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	CofE-like	8043883	3000257	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F420_ligase_1st	e2phnA1	A: alpha arrays	X: HTH	H: CofE insertion domain (From Topology)	T: CofE insertion domain	F: F420_ligase_1st	ECOD (1.6)
A	F420_ligase_2nd	e2phnA2	A: a+b three layers	X: CofE-like (From Topology)	H: CofE-like (From Topology)	T: CofE-like	F: F420_ligase_2nd	ECOD (1.6)
B	F420_ligase_1st	e2phnB1	A: alpha arrays	X: HTH	H: CofE insertion domain (From Topology)	T: CofE insertion domain	F: F420_ligase_1st	ECOD (1.6)
B	F420_ligase_2nd	e2phnB2	A: a+b three layers	X: CofE-like (From Topology)	H: CofE-like (From Topology)	T: CofE-like	F: F420_ligase_2nd	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1330.100	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.2.0)
A	3.90.1660.10	Alpha Beta	Alpha-Beta Complex	CofE-like fold	CofE-like domain	CATH (4.2.0)
B	3.30.1330.100	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.2.0)
B	3.90.1660.10	Alpha Beta	Alpha-Beta Complex	CofE-like fold	CofE-like domain	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Identifier	Description	Comments	Source
A, B	PF01996	F420-0:Gamma-glutamyl ligase (F420_ligase)	F420-0:Gamma-glutamyl ligase	-	Family

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	F420-0:gamma-glutamyl ligase	catalytic activity ligase activity ligase activity, forming carbon-nitrogen bonds acid-amino acid ligase activity coenzyme F420-0 gamma-glutamyl ligase activity coenzyme F420-0:L-glutamate ligase activity coenzyme F420-1:gamma-L-glutamate ligase activity binding ion binding cation binding metal ion binding

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.