3F0F
Co-crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei with hydrolyzed CDP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3f0fa_ | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | automated matches | automated matches | Pseudomonas pseudomallei (Burkholderia pseudomallei ) [TaxId: 28450 ], | SCOPe (2.08) |
B | d3f0fb_ | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | automated matches | automated matches | Pseudomonas pseudomallei (Burkholderia pseudomallei ) [TaxId: 28450 ], | SCOPe (2.08) |
C | d3f0fc_ | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | automated matches | automated matches | Pseudomonas pseudomallei (Burkholderia pseudomallei ) [TaxId: 28450 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | YgbB | e3f0fA1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
B | YgbB | e3f0fB1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
C | YgbB | e3f0fC1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1330.50 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
B | 3.30.1330.50 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
C | 3.30.1330.50 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02542 | YgbB family (YgbB) | YgbB family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036571 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily | Homologous Superfamily | |
IPR003526 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | Domain | |
IPR020555 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site | Conserved Site |