3K16

Crystal Structure of BRCA1 BRCT D1840T in complex with a minimal recognition tetrapeptide with a free carboxy C-terminus

Present annotations:

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Product Annotation
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	BRCT domain-like	8041659	3000159	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	BRCT domain-like	8041661	3000159	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PTCB-BRCT	e3k16A1	A: a/b three-layered sandwiches	X: BRCT domain (From Topology)	H: BRCT domain (From Topology)	T: BRCT domain	F: PTCB-BRCT	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10190	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	BRCT domain	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00533	BRCA1 C Terminus (BRCT) domain (BRCT)	BRCA1 C Terminus (BRCT) domain	-	Family

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Breast cancer type 1 susceptibility protein	DNA binding binding organic cyclic compound binding nucleic acid binding heterocyclic compound binding ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity DNA binding binding organic cyclic compound binding nucleic acid binding heterocyclic compound binding ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription regulatory region nucleic acid binding identical protein binding p53 binding cytoskeletal protein binding tubulin binding transcription coactivator activity transcription regulator activity transcription coregulator activity RNA polymerase binding RNA binding damaged DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding	peptidyl-lysine methylation histone H3-K9 modification regulation of protein modification process positive regulation of protein metabolic process peptidyl-lysine modification positive regulation of biological process positive regulation of post-translational protein modification regulation of primary metabolic process regulation of nitrogen compound metabolic process positive regulation of metabolic process positive regulation of protein modification process organic substance metabolic process histone H3-K9 methylation peptidyl-amino acid modification peptidyl-lysine methylation histone H3-K9 modification regulation of protein modification process positive regulation of protein metabolic process peptidyl-lysine modification positive regulation of biological process positive regulation of post-translational protein modification regulation of primary metabolic process regulation of nitrogen compound metabolic process positive regulation of metabolic process positive regulation of protein modification process organic substance metabolic process histone H3-K9 methylation peptidyl-amino acid modification nitrogen compound metabolic process positive regulation of macromolecule metabolic process protein metabolic process protein modification process regulation of biological process histone lysine methylation organonitrogen compound metabolic process regulation of histone modification regulation of post-translational protein modification protein methylation regulation of protein metabolic process regulation of histone methylation biological regulation primary metabolic process regulation of macromolecule metabolic process positive regulation of histone H3-K9 methylation histone methylation macromolecule methylation positive regulation of histone methylation histone modification protein alkylation positive regulation of nitrogen compound metabolic process methylation macromolecule modification regulation of histone H3-K9 methylation metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process positive regulation of histone H4-K20 methylation peptidyl-lysine acetylation histone acetylation protein acylation regulation of histone acetylation internal peptidyl-lysine acetylation positive regulation of peptidyl-lysine acetylation positive regulation of protein acetylation positive regulation of histone acetylation protein acetylation regulation of protein acetylation regulation of peptidyl-lysine acetylation internal protein amino acid acetylation localization cellular response to stimulus extrinsic apoptotic signaling pathway via death domain receptors regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of biological process regulation of signal transduction regulation of programmed cell death extrinsic apoptotic signaling pathway negative regulation of cell communication cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of cellular process signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process negative regulation of extrinsic apoptotic signaling pathway via death domain receptors cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway via death domain receptors regulation of cell communication cellular process apoptotic process programmed cell death regulation of apoptotic signaling pathway protein autoubiquitination protein ubiquitination protein modification by small protein conjugation protein modification by small protein conjugation or removal homologous recombination DNA recombination cellular metabolic process cellular nitrogen compound metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process heterocycle metabolic process cellular aromatic compound metabolic process histone monoubiquitination protein monoubiquitination histone H2A monoubiquitination histone H2A ubiquitination histone ubiquitination regulation of cellular response to stress positive regulation of cellular metabolic process positive regulation of response to stimulus positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair positive regulation of nucleobase-containing compound metabolic process regulation of cellular metabolic process regulation of DNA repair positive regulation of DNA metabolic process DNA damage response regulation of DNA metabolic process protein K6-linked ubiquitination protein polyubiquitination negative regulation of metabolic process reactive oxygen species metabolic process negative regulation of cellular metabolic process negative regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process response to organic substance response to lipid intracellular receptor signaling pathway intracellular estrogen receptor signaling pathway hormone-mediated signaling pathway negative regulation of intracellular steroid hormone receptor signaling pathway cellular response to endogenous stimulus response to hormone response to steroid hormone regulation of intracellular steroid hormone receptor signaling pathway regulation of intracellular estrogen receptor signaling pathway cellular response to organic substance cellular response to steroid hormone stimulus response to organic cyclic compound negative regulation of intracellular estrogen receptor signaling pathway cellular response to hormone stimulus response to endogenous stimulus cellular response to organic cyclic compound cellular response to chemical stimulus steroid hormone mediated signaling pathway response to chemical cellular response to lipid intracellular steroid hormone receptor signaling pathway negative regulation of nitrogen compound metabolic process cellular nitrogen compound biosynthetic process negative regulation of RNA biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of cellular biosynthetic process regulation of gene expression biosynthetic process aromatic compound biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process negative regulation of biosynthetic process regulation of protein ubiquitination regulation of protein modification by small protein conjugation or removal positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination negative regulation of post-translational protein modification negative regulation of protein modification process negative regulation of protein metabolic process negative regulation of histone acetylation negative regulation of protein acetylation negative regulation of peptidyl-lysine acetylation postreplication repair response to cytokine cellular response to tumor necrosis factor cellular response to cytokine stimulus response to tumor necrosis factor DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity DNA replication DNA strand resection involved in replication fork processing replication fork processing developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development anatomical structure development embryo development regulation of cell cycle phase transition DNA damage checkpoint signaling G2/M transition of mitotic cell cycle mitotic G2 DNA damage checkpoint signaling negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle mitotic G2/M transition checkpoint regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling mitotic DNA damage checkpoint signaling negative regulation of cell cycle phase transition cell cycle regulation of cell cycle cell cycle process cell cycle G2/M phase transition negative regulation of mitotic cell cycle phase transition regulation of G2/M transition of mitotic cell cycle regulation of cell cycle process DNA integrity checkpoint signaling regulation of cell cycle G2/M phase transition negative regulation of cell cycle process cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic cell cycle process negative regulation of cell cycle G2/M phase transition signal transduction in response to DNA damage negative regulation of G2/M transition of mitotic cell cycle mitotic cell cycle phase transition protein-DNA complex organization cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis protein-containing complex organization epigenetic regulation of gene expression dosage compensation dosage compensation by inactivation of X chromosome protein deubiquitination protein K63-linked deubiquitination protein modification by small protein removal proteolysis histone deubiquitination histone H2A K63-linked deubiquitination negative regulation of histone H3-K4 methylation regulation of histone H3-K4 methylation histone H3-K4 methylation negative regulation of histone methylation positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process positive regulation of gene expression positive regulation of cellular biosynthetic process chromosome segregation response to ionizing radiation cellular response to ionizing radiation response to radiation response to abiotic stimulus cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus regulation of growth regulation of cellular component organization growth negative regulation of cell growth regulation of cell growth cell growth negative regulation of growth regulation of cytoskeleton organization negative regulation of centriole replication non-membrane-bounded organelle assembly microtubule cytoskeleton organization negative regulation of organelle assembly cellular component biogenesis centrosome duplication negative regulation of centrosome cycle cellular component assembly centrosome cycle negative regulation of centrosome duplication regulation of centriole replication centriole replication centriole assembly microtubule organizing center organization organelle assembly negative regulation of cellular component organization negative regulation of cytoskeleton organization regulation of centrosome cycle regulation of microtubule-based process regulation of cellular component biogenesis regulation of organelle organization organelle organization negative regulation of organelle organization regulation of centrosome duplication regulation of organelle assembly microtubule-based process cytoskeleton organization regulation of cell cycle checkpoint regulation of intracellular signal transduction regulation of DNA damage checkpoint DNA modification regulation of DNA methylation DNA alkylation DNA methylation transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of RNA biosynthetic process negative regulation of histone H3-K9 methylation response to estrogen regulation of cytokine production cytokine production regulation of multicellular organismal process regulation of vascular endothelial growth factor production vascular endothelial growth factor production positive regulation of multicellular organismal process positive regulation of vascular endothelial growth factor production positive regulation of cytokine production positive regulation of histone H4-K16 acetylation histone H4 acetylation histone H4-K16 acetylation regulation of histone H4 acetylation positive regulation of histone H4 acetylation regulation of gene expression by genomic imprinting positive regulation of histone H3-K9 acetylation histone H3 acetylation regulation of histone H3-K9 acetylation histone H3-K9 acetylation intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process cellular lipid metabolic process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process recombinational repair double-strand break repair via homologous recombination double-strand break repair regulation of developmental process angiogenesis regulation of vasculature development positive regulation of developmental process tube morphogenesis regulation of anatomical structure morphogenesis blood vessel development system development regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis cellular response to nitrogen compound response to alcohol response to organonitrogen compound response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to alcohol cellular response to organonitrogen compound response to indole-3-methanol cellular response to indole-3-methanol negative regulation of small molecule metabolic process regulation of lipid metabolic process negative regulation of lipid biosynthetic process cellular ketone metabolic process regulation of small molecule metabolic process regulation of cellular ketone metabolic process regulation of fatty acid metabolic process regulation of fatty acid biosynthetic process negative regulation of lipid metabolic process negative regulation of fatty acid biosynthetic process negative regulation of fatty acid metabolic process regulation of lipid biosynthetic process positive regulation of histone H3-K4 methylation	protein-containing complex catalytic complex DNA repair complex intracellular organelle XY body intracellular anatomical structure sex chromosome organelle intracellular non-membrane-bounded organelle chromosome cellular anatomical entity non-membrane-bounded organelle membrane-bounded organelle male germ cell nucleus protein-containing complex catalytic complex DNA repair complex intracellular organelle XY body intracellular anatomical structure sex chromosome organelle intracellular non-membrane-bounded organelle chromosome cellular anatomical entity non-membrane-bounded organelle membrane-bounded organelle male germ cell nucleus nucleus germ cell nucleus intracellular membrane-bounded organelle ubiquitin ligase complex nuclear protein-containing complex transferase complex nuclear ubiquitin ligase complex intracellular protein-containing complex BRCA1-BARD1 complex cell periphery plasma membrane membrane condensed nuclear chromosome membrane-enclosed lumen nuclear chromosome intracellular organelle lumen lateral element organelle lumen synaptonemal structure synaptonemal complex condensed chromosome nuclear lumen ribonucleoprotein complex nuclear body nucleoplasm BRCA1-C complex cytoplasm BRCA1-A complex BRCA1-B complex gamma-tubulin ring complex gamma-tubulin complex microtubule organizing center cytoskeleton microtubule cytoskeleton
B	phospho peptide	none	none	none

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.