3LDZ
Crystal structure of human STAM1 VHS domain in complex with ubiquitin
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth F] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2 Family | VHS domain | 8066260 | 4001359 | SCOP2 (2022-06-29) |
B [auth A] | SCOP2 Superfamily | ENTH/VHS domain-like | 8066261 | 3000164 | SCOP2 (2022-06-29) |
C [auth D] | SCOP2B Superfamily | ENTH/VHS domain-like | 8066261 | 3000164 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | ENTH/VHS domain-like | 8066261 | 3000164 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | ENTH/VHS domain-like | 8066261 | 3000164 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth F] | PF00240 | e3ldzF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
F [auth E] | PF00240 | e3ldzE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
G | PF00240 | e3ldzG1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
B [auth A] | PF00790 | e3ldzA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00790 | ECOD (1.6) |
C [auth D] | PF00790 | e3ldzD1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00790 | ECOD (1.6) |
D [auth B] | PF00790 | e3ldzB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00790 | ECOD (1.6) |
E [auth C] | PF00790 | e3ldzC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00790 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth F] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
F [auth E] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
G | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
B [auth A] | 1.25.40.90 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
C [auth D] | 1.25.40.90 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
D [auth B] | 1.25.40.90 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
E [auth C] | 1.25.40.90 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth F], F [auth E], G | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
B [auth A], C [auth D], D [auth B], E [auth C] | PF00790 | VHS domain (VHS) | VHS domain | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth F], F [auth E], G | IPR019954 | Ubiquitin conserved site | Conserved Site |
A [auth F], F [auth E], G | IPR000626 | Ubiquitin-like domain | Domain |
A [auth F], F [auth E], G | IPR019956 | Ubiquitin domain | Domain |
A [auth F], F [auth E], G | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
B [auth A], C [auth D], D [auth B], E [auth C] | IPR047492 | STAM1, non-canonical GAT domain | Domain |
B [auth A], C [auth D], D [auth B], E [auth C] | IPR002014 | VHS domain | Domain |
B [auth A], C [auth D], D [auth B], E [auth C] | IPR008942 | ENTH/VHS | Homologous Superfamily |
B [auth A], C [auth D], D [auth B], E [auth C] | IPR035657 | STAM1, SH3 domain | Domain |
B [auth A], C [auth D], D [auth B], E [auth C] | IPR001452 | SH3 domain | Domain |
B [auth A], C [auth D], D [auth B], E [auth C] | IPR036028 | SH3-like domain superfamily | Homologous Superfamily |
B [auth A], C [auth D], D [auth B], E [auth C] | IPR047528 | STAM1, VHS domain | Domain |
B [auth A], C [auth D], D [auth B], E [auth C] | IPR003903 | Ubiquitin interacting motif | Conserved Site |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth F], F [auth E], G | P0CG48 | : |
B [auth A], C [auth D], D [auth B], E [auth C] | Q92783 | :