4C2E | pdb_00004c2e

Crystal structure of the protease CtpB(S309A) present in a resting state


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APDZ_2e4c2eA13 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
APG_binding_1e4c2eA15 A: alpha arraysX: PGBD-like (From Topology)H: PGBD-like (From Topology)T: PGBD-likeF: PG_binding_1ECOD (1.6)
APeptidase_S41_CPPe4c2eA16 A: alpha bundlesX: Tail specific protease helical domain (From Topology)H: Tail specific protease helical domain (From Topology)T: Tail specific protease helical domainF: Peptidase_S41_CPPECOD (1.6)
APeptidase_S41e4c2eA14 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: Peptidase_S41ECOD (1.6)
BPDZ_2e4c2eB7 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
BPG_binding_1e4c2eB2 A: alpha arraysX: PGBD-like (From Topology)H: PGBD-like (From Topology)T: PGBD-likeF: PG_binding_1ECOD (1.6)
BPeptidase_S41_CPPe4c2eB8 A: alpha bundlesX: Tail specific protease helical domain (From Topology)H: Tail specific protease helical domain (From Topology)T: Tail specific protease helical domainF: Peptidase_S41_CPPECOD (1.6)
BPeptidase_S41e4c2eB4 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: Peptidase_S41ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.30.42.10 Mainly Beta Roll Pdz3 Domain PDZ domainCATH (utative)
B1.10.101.10 Mainly Alpha Orthogonal Bundle Muramoyl-pentapeptide Carboxypeptidase domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF13180PDZ domain (PDZ_2)PDZ domainDomain
A, B
PF03572Peptidase family S41 (Peptidase_S41)Peptidase family S41- Family
A, B
PF01471Putative peptidoglycan binding domain (PG_binding_1)Putative peptidoglycan binding domainThis domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ...This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins [3]. The domain is found to bind peptidoglycan experimentally [4].
Domain
A, B
PF22694Activating protease CtpB N-terminal domain (CtpB_N-like)Activating protease CtpB N-terminal domainThis domain is found N-terminal in Carboxy-terminal processing protease CtpB and related proteins. This enzyme is involved in signal transduction pathway leading to the proteolytic activation of the mother cell transcription factor pro-sigma-K during ...This domain is found N-terminal in Carboxy-terminal processing protease CtpB and related proteins. This enzyme is involved in signal transduction pathway leading to the proteolytic activation of the mother cell transcription factor pro-sigma-K during sporulation. This domain contains auto-cleavage site at which it is proteolytically cleaved. The remaining part in the mature enzyme is involved in dimerisation [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage