4G1L | pdb_00004g1l

Crystal structure of Newcastle disease virus matrix protein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	EV matrix protein-like	8089995	3000219	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	EV matrix protein-like	8089994	3000219	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EV matrix protein-like	8089994	3000219	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EV matrix protein-like	8089995	3000219	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Matrix_2nd	e4g1lA4	A: beta barrels	X: EV matrix protein (From Homology)	H: EV matrix protein	T: EV matrix protein	F: Matrix_2nd	ECOD (1.6)
A	Matrix_1st	e4g1lA3	A: beta barrels	X: EV matrix protein (From Homology)	H: EV matrix protein	T: EV matrix protein	F: Matrix_1st	ECOD (1.6)
B	Matrix_2nd	e4g1lB4	A: beta barrels	X: EV matrix protein (From Homology)	H: EV matrix protein	T: EV matrix protein	F: Matrix_2nd	ECOD (1.6)
B	Matrix_1st	e4g1lB3	A: beta barrels	X: EV matrix protein (From Homology)	H: EV matrix protein	T: EV matrix protein	F: Matrix_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.20.50	Mainly Beta	Distorted Sandwich	Topoisomerase I	domain 3	CATH (4.3.0)
A	2.70.20.60	Mainly Beta	Distorted Sandwich	Topoisomerase I	domain 3	CATH (4.3.0)
B	2.70.20.50	Mainly Beta	Distorted Sandwich	Topoisomerase I	domain 3	CATH (4.3.0)
B	2.70.20.60	Mainly Beta	Distorted Sandwich	Topoisomerase I	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00661	Paramyxoviridae matrix protein N-terminal domain (Matrix_Paramyxo_N)	Paramyxoviridae matrix protein N-terminal domain	This entry represents the N-terminal domain found in a variety of paramyxoviruses such as Morbillivirus, paramyxovirus, pneumovirus M proteins. The N-terminal domain of the NDV matrix protein consists of residues 1-181. It adopts a beta-sandwich fold ...	This entry represents the N-terminal domain found in a variety of paramyxoviruses such as Morbillivirus, paramyxovirus, pneumovirus M proteins. The N-terminal domain of the NDV matrix protein consists of residues 1-181. It adopts a beta-sandwich fold in which the beta-strands in the opposing beta-sheets are approximately orthogonal to each other. Several alpha-helices are situated mostly on the surface of this beta-sandwich domain. The N-terminal domain is connected to a C-terminal domain with similar fold via a 16 amino acid linker. The two domains are related by an approximate fourfold rotation axis coincident with the twofold axis of the matrix protein dimer. The matrix protein dimer represents the physiologically relevant assembly unit. The N-terminal domain contributes to the highly positively charged surface that faces the viral membrane, enabling association with the negatively charged membrane [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Matrix protein	structural constituent of virion structural molecule activity identical protein binding protein binding binding	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle	virion component viral membrane viral envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042539	Viral matrix protein, C-terminal domain	Homologous Superfamily
A, B	IPR042540	Viral matrix protein, N-terminal domain	Homologous Superfamily
A, B	IPR000982	Matrix protein, N-terminal domain	Domain
A, B	IPR055413	Matrix protein, C-terminal, Paramyxoviridae	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.