Structure of the eag domain-CNBHD complex of the mouse EAG1 channel
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H | d4lloh_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| F | d4llof_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| D | d4llod_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| B | d4llob_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084678 | 3000471 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084678 | 3000471 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084678 | 3000471 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084678 | 3000471 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G | cNMP_binding_1 | e4lloG1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
| E | cNMP_binding_1 | e4lloE1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
| C | cNMP_binding_1 | e4lloC1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
| A | cNMP_binding_1 | e4lloA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
| H | PAS | e4lloH1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
| F | PAS | e4lloF1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
| D | PAS | e4lloD1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
| B | PAS | e4lloB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| G | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
| E | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
| C | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
| A | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
| H | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
| F | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
| D | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
| B | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain | |
| PF13426 | PAS domain (PAS_9) | PAS domain | This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
