Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth C1]SCOP2B SuperfamilyPhotosystem II antenna protein-like8100666 3001674 SCOP2B (2022-06-29)
RA [auth C2]SCOP2B SuperfamilyPhotosystem II antenna protein-like8100666 3001674 SCOP2B (2022-06-29)
W [auth c1]SCOP2 FamilyPhotosystem II antenna protein-like8100665 4002735 SCOP2 (2022-06-29)
W [auth c1]SCOP2 SuperfamilyPhotosystem II antenna protein-like8100666 3001674 SCOP2 (2022-06-29)
NB [auth c2]SCOP2B SuperfamilyPhotosystem II antenna protein-like8100666 3001674 SCOP2B (2022-06-29)
LB [auth a2]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8074572 3000736 SCOP2B (2022-06-29)
PA [auth A2]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8074572 3000736 SCOP2B (2022-06-29)
U [auth a1]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8074572 3000736 SCOP2B (2022-06-29)
A [auth A1]SCOP2 FamilyBacterial photosystem II reaction centre L and M subunits8074571 4002035 SCOP2 (2022-06-29)
A [auth A1]SCOP2 SuperfamilyBacterial photosystem II reaction centre L and M subunits8074572 3000736 SCOP2 (2022-06-29)
J [auth K1]SCOP2B SuperfamilyPhotosystem II reaction center protein K PsbK8100658 3001585 SCOP2B (2022-06-29)
UB [auth k2]SCOP2B SuperfamilyPhotosystem II reaction center protein K PsbK8100658 3001585 SCOP2B (2022-06-29)
YA [auth K2]SCOP2 FamilyPsbK-like8100657 4002673 SCOP2 (2022-06-29)
YA [auth K2]SCOP2 SuperfamilyPhotosystem II reaction center protein K PsbK8100658 3001585 SCOP2 (2022-06-29)
DA [auth k1]SCOP2B SuperfamilyPhotosystem II reaction center protein K PsbK8100658 3001585 SCOP2B (2022-06-29)
EA [auth l1]SCOP2B SuperfamilyPhotosystem II reaction center protein L PsbL8100664 3001523 SCOP2B (2022-06-29)
K [auth L1]SCOP2B SuperfamilyPhotosystem II reaction center protein L PsbL8100664 3001523 SCOP2B (2022-06-29)
ZA [auth L2]SCOP2B SuperfamilyPhotosystem II reaction center protein L PsbL8100664 3001523 SCOP2B (2022-06-29)
VB [auth l2]SCOP2 FamilyPsbL-like8100663 4002634 SCOP2 (2022-06-29)
VB [auth l2]SCOP2 SuperfamilyPhotosystem II reaction center protein L PsbL8100664 3001523 SCOP2 (2022-06-29)
IA [auth u1]SCOP2B SuperfamilyPsbU/PolX domain-like8100772 3000893 SCOP2B (2022-06-29)
O [auth U1]SCOP2B SuperfamilyPsbU/PolX domain-like8100772 3000893 SCOP2B (2022-06-29)
ZB [auth u2]SCOP2 FamilyPsbU-like8100771 4001403 SCOP2 (2022-06-29)
ZB [auth u2]SCOP2 SuperfamilyPsbU/PolX domain-like8100772 3000893 SCOP2 (2022-06-29)
DB [auth U2]SCOP2B SuperfamilyPsbU/PolX domain-like8100772 3000893 SCOP2B (2022-06-29)
P [auth V1]SCOP2B SuperfamilyCytochrome c8099936 3000815 SCOP2B (2022-06-29)
AC [auth v2]SCOP2 FamilyMonodomain cytochrome c8099935 4000635 SCOP2 (2022-06-29)
AC [auth v2]SCOP2 SuperfamilyCytochrome c8099936 3000815 SCOP2 (2022-06-29)
EB [auth V2]SCOP2B SuperfamilyCytochrome c8099936 3000815 SCOP2B (2022-06-29)
JA [auth v1]SCOP2B SuperfamilyCytochrome c8099936 3000815 SCOP2B (2022-06-29)
BC [auth y2]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf128093137 3002680 SCOP2B (2022-06-29)
FB [auth Y2]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf128093137 3002680 SCOP2B (2022-06-29)
Q [auth Y1]SCOP2 FamilyPhotosystem II reaction center protein Ycf128047735 4005791 SCOP2 (2022-06-29)
Q [auth Y1]SCOP2 SuperfamilyPhotosystem II reaction center protein Ycf128093137 3002680 SCOP2 (2022-06-29)
KA [auth y1]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf128093137 3002680 SCOP2B (2022-06-29)
B [auth B1]SCOP2B SuperfamilyPhotosystem II antenna protein-like8098126 3001674 SCOP2B (2022-06-29)
QA [auth B2]SCOP2B SuperfamilyPhotosystem II antenna protein-like8098126 3001674 SCOP2B (2022-06-29)
V [auth b1]SCOP2 FamilyPhotosystem II antenna protein-like8098125 4002735 SCOP2 (2022-06-29)
V [auth b1]SCOP2 SuperfamilyPhotosystem II antenna protein-like8098126 3001674 SCOP2 (2022-06-29)
MB [auth b2]SCOP2B SuperfamilyPhotosystem II antenna protein-like8098126 3001674 SCOP2B (2022-06-29)
SA [auth D2]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8100668 3000736 SCOP2B (2022-06-29)
D [auth D1]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8100668 3000736 SCOP2B (2022-06-29)
OB [auth d2]SCOP2 FamilyBacterial photosystem II reaction centre L and M subunits8100667 4002035 SCOP2 (2022-06-29)
OB [auth d2]SCOP2 SuperfamilyBacterial photosystem II reaction centre L and M subunits8100668 3000736 SCOP2 (2022-06-29)
X [auth d1]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8100668 3000736 SCOP2B (2022-06-29)
E [auth E1]SCOP2B SuperfamilyCytochrome b559 subunits8100660 3001602 SCOP2B (2022-06-29)
PB [auth e2]SCOP2B SuperfamilyCytochrome b559 subunits8100660 3001602 SCOP2B (2022-06-29)
TA [auth E2]SCOP2 FamilyCytochrome b559 subunits8100659 4002681 SCOP2 (2022-06-29)
TA [auth E2]SCOP2 SuperfamilyCytochrome b559 subunits8100660 3001602 SCOP2 (2022-06-29)
Y [auth e1]SCOP2B SuperfamilyCytochrome b559 subunits8100660 3001602 SCOP2B (2022-06-29)
QB [auth f2]SCOP2B SuperfamilyCytochrome b559 subunits8100662 3001602 SCOP2B (2022-06-29)
UA [auth F2]SCOP2 FamilyCytochrome b559 subunits8100661 4002681 SCOP2 (2022-06-29)
UA [auth F2]SCOP2 SuperfamilyCytochrome b559 subunits8100662 3001602 SCOP2 (2022-06-29)
Z [auth f1]SCOP2B SuperfamilyCytochrome b559 subunits8100662 3001602 SCOP2B (2022-06-29)
F [auth F1]SCOP2B SuperfamilyCytochrome b559 subunits8100662 3001602 SCOP2B (2022-06-29)
G [auth H1]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8098124 3001547 SCOP2B (2022-06-29)
RB [auth h2]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8098124 3001547 SCOP2B (2022-06-29)
AA [auth h1]SCOP2 FamilyPsbH-like8098123 4002649 SCOP2 (2022-06-29)
AA [auth h1]SCOP2 SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8098124 3001547 SCOP2 (2022-06-29)
VA [auth H2]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8098124 3001547 SCOP2B (2022-06-29)
H [auth I1]SCOP2B SuperfamilyPhotosystem II reaction center protein I PsbI8098122 3001590 SCOP2B (2022-06-29)
SB [auth i2]SCOP2B SuperfamilyPhotosystem II reaction center protein I PsbI8098122 3001590 SCOP2B (2022-06-29)
BA [auth i1]SCOP2B SuperfamilyPhotosystem II reaction center protein I PsbI8098122 3001590 SCOP2B (2022-06-29)
WA [auth I2]SCOP2 FamilyPsbI-like8098121 4002676 SCOP2 (2022-06-29)
WA [auth I2]SCOP2 SuperfamilyPhotosystem II reaction center protein I PsbI8098122 3001590 SCOP2 (2022-06-29)
I [auth J1]SCOP2B SuperfamilyPhotosystem II reaction center protein J PsbJ8082352 3001534 SCOP2B (2022-06-29)
CA [auth j1]SCOP2B SuperfamilyPhotosystem II reaction center protein J PsbJ8082352 3001534 SCOP2B (2022-06-29)
TB [auth j2]SCOP2B SuperfamilyPhotosystem II reaction center protein J PsbJ8082352 3001534 SCOP2B (2022-06-29)
XA [auth J2]SCOP2 FamilyPsbJ-like8082351 4002642 SCOP2 (2022-06-29)
XA [auth J2]SCOP2 SuperfamilyPhotosystem II reaction center protein J PsbJ8082352 3001534 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth C1]PSII_1ste4yuuC11 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
RA [auth C2]PSII_1ste4yuuC21 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
W [auth c1]PSII_1ste4yuuc11 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
NB [auth c2]PSII_1ste4yuuc21 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
LB [auth a2]Photo_RCe4yuua21 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
PA [auth A2]Photo_RCe4yuuA21 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
U [auth a1]Photo_RCe4yuua11 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
A [auth A1]Photo_RCe4yuuA11 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
J [auth K1]PsbKe4yuuK11 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
UB [auth k2]PsbKe4yuuk21 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
YA [auth K2]PsbKe4yuuK21 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
DA [auth k1]PsbKe4yuuk11 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
EA [auth l1]PsbLe4yuul11 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
K [auth L1]PsbLe4yuuL11 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
ZA [auth L2]PsbLe4yuuL21 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
VB [auth l2]PsbLe4yuul21 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
AB [auth M2]PsbMe4yuuM21 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
FA [auth m1]PsbMe4yuum11 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
L [auth M1]PsbMe4yuuM11 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
WB [auth m2]PsbMe4yuum21 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
BB [auth O2]MSPe4yuuO21 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
GA [auth o1]MSPe4yuuo11 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
M [auth O1]MSPe4yuuO11 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
XB [auth o2]MSPe4yuuo21 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
HA [auth t1]PsbTe4yuut11 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
CB [auth T2]PsbTe4yuuT21 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
N [auth T1]PsbTe4yuuT11 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
YB [auth t2]PsbTe4yuut21 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
IA [auth u1]PsbUe4yuuu11 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
O [auth U1]PsbUe4yuuU11 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
ZB [auth u2]PsbUe4yuuu21 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
DB [auth U2]PsbUe4yuuU21 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
P [auth V1]Cytochrom_C550e4yuuV11 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
AC [auth v2]Cytochrom_C550e4yuuv21 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
EB [auth V2]Cytochrom_C550e4yuuV21 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
JA [auth v1]Cytochrom_C550e4yuuv11 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
BC [auth y2]PSII_Ycf12e4yuuy21 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
FB [auth Y2]PSII_Ycf12e4yuuY21 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
Q [auth Y1]PSII_Ycf12e4yuuY11 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
KA [auth y1]PSII_Ycf12e4yuuy11 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
GB [auth X2]PsbXe4yuuX21 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
CC [auth x2]PsbXe4yuux21 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
LA [auth x1]PsbXe4yuux11 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
R [auth X1]PsbXe4yuuX11 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
B [auth B1]PSII_1ste4yuuB11 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
B [auth B1]PSII_2nde4yuuB12 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
QA [auth B2]PSII_1ste4yuuB22 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
QA [auth B2]PSII_2nde4yuuB21 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
V [auth b1]PSII_1ste4yuub12 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
V [auth b1]PSII_2nde4yuub11 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
MB [auth b2]PSII_1ste4yuub22 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
MB [auth b2]PSII_2nde4yuub21 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
JB [auth Q2]PsbQe4yuuQ21 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PsbQECOD (1.6)
OA [auth q1]PsbQe4yuuq11 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PsbQECOD (1.6)
FC [auth z2]Ycf9e4yuuz21 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
KB [auth Z2]Ycf9e4yuuZ21 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
SA [auth D2]Photo_RCe4yuuD21 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
D [auth D1]Photo_RCe4yuuD11 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
OB [auth d2]Photo_RCe4yuud21 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
X [auth d1]Photo_RCe4yuud11 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
E [auth E1]Cytochrom_B559ae4yuuE11 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
PB [auth e2]Cytochrom_B559ae4yuue21 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
TA [auth E2]Cytochrom_B559ae4yuuE21 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
Y [auth e1]Cytochrom_B559ae4yuue11 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
QB [auth f2]Cytochrom_B559e4yuuf21 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
UA [auth F2]Cytochrom_B559e4yuuF21 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
Z [auth f1]Cytochrom_B559e4yuuf11 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
F [auth F1]Cytochrom_B559e4yuuF11 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
G [auth H1]PsbHe4yuuH11 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
RB [auth h2]PsbHe4yuuh21 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
AA [auth h1]PsbHe4yuuh11 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
VA [auth H2]PsbHe4yuuH21 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
H [auth I1]PsbIe4yuuI11 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
SB [auth i2]PsbIe4yuui21 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
BA [auth i1]PsbIe4yuui11 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
WA [auth I2]PsbIe4yuuI21 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
I [auth J1]PsbJe4yuuJ11 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
CA [auth j1]PsbJe4yuuj11 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
TB [auth j2]PsbJe4yuuj21 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
XA [auth J2]PsbJe4yuuJ21 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth C1],
NB [auth c2],
RA [auth C2],
W [auth c1]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
A [auth A1],
LB [auth a2],
PA [auth A2],
U [auth a1]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
DA [auth k1],
J [auth K1],
UB [auth k2],
YA [auth K2]
PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
EA [auth l1],
K [auth L1],
VB [auth l2],
ZA [auth L2]
PF02419PsbL protein (PsbL)PsbL protein- Family
CB [auth T2],
HA [auth t1],
N [auth T1],
YB [auth t2]
PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
DB [auth U2],
IA [auth u1],
O [auth U1],
ZB [auth u2]
PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
AC [auth v2],
EB [auth V2],
JA [auth v1],
P [auth V1]
PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].Domain
BC [auth y2],
FB [auth Y2],
KA [auth y1],
Q [auth Y1]
PF05969Photosystem II complex subunit Ycf12 (PSII_Ycf12)Photosystem II complex subunit Ycf12- Family
B [auth B1],
MB [auth b2],
QA [auth B2],
V [auth b1]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
JB [auth Q2],
OA [auth q1]
PF05757Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ)Oxygen evolving enhancer protein 3 (PsbQ)- Family
D [auth D1],
OB [auth d2],
SA [auth D2],
X [auth d1]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
E [auth E1],
PB [auth e2],
TA [auth E2],
Y [auth e1]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
E [auth E1],
PB [auth e2],
TA [auth E2],
Y [auth e1]
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
F [auth F1],
QB [auth f2],
UA [auth F2],
Z [auth f1]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
AA [auth h1],
G [auth H1],
RB [auth h2],
VA [auth H2]
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
BA [auth i1],
H [auth I1],
SB [auth i2],
WA [auth I2]
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
CA [auth j1],
I [auth J1],
TB [auth j2],
XA [auth J2]
PF01788PsbJ (PsbJ)PsbJ- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth C1],
NB [auth c2],
RA [auth C2],
W [auth c1]
Photosystem II CP43 reaction center protein
A [auth A1],
LB [auth a2],
PA [auth A2],
U [auth a1]
Photosystem II protein D1
DA [auth k1],
J [auth K1],
UB [auth k2],
YA [auth K2]
Photosystem II reaction center protein K-
EA [auth l1],
K [auth L1],
VB [auth l2],
ZA [auth L2]
Photosystem II reaction center protein L-
AB [auth M2],
FA [auth m1],
L [auth M1],
WB [auth m2]
PHOTOSYSTEM II REACTION CENTER PROTEIN M---
BB [auth O2],
GA [auth o1],
M [auth O1],
XB [auth o2]
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBO---
CB [auth T2],
HA [auth t1],
N [auth T1],
YB [auth t2]
Photosystem II reaction center protein T-
DB [auth U2],
IA [auth u1],
O [auth U1],
ZB [auth u2]
Photosystem II 12 kDa extrinsic protein, chloroplastic-
AC [auth v2],
EB [auth V2],
JA [auth v1],
P [auth V1]
Cytochrome c-550
BC [auth y2],
FB [auth Y2],
KA [auth y1],
Q [auth Y1]
Photosystem II reaction center protein Ycf12-
CC [auth x2],
GB [auth X2],
LA [auth x1],
R [auth X1]
PHOTOSYSTEM II REACTION CENTER PROTEIN X---
DC [auth s2],
HB [auth S2],
MA [auth s1],
S [auth S1]
PEPTIDE CHAIN UNASSIGNED---
B [auth B1],
MB [auth b2],
QA [auth B2],
V [auth b1]
Photosystem II CP47 reaction center protein
EC [auth w2],
IB [auth W2],
NA [auth w1],
T [auth W1]
PEPTIDE CHAIN UNASSIGNED---
JB [auth Q2],
OA [auth q1]
Extrinsic protein in photosystem II
FC [auth z2],
KB [auth Z2]
Photosystem II reaction center protein Z---
D [auth D1],
OB [auth d2],
SA [auth D2],
X [auth d1]
Photosystem II D2 protein
E [auth E1],
PB [auth e2],
TA [auth E2],
Y [auth e1]
Cytochrome b559 subunit alpha
F [auth F1],
QB [auth f2],
UA [auth F2],
Z [auth f1]
Cytochrome b559 subunit beta
AA [auth h1],
G [auth H1],
RB [auth h2],
VA [auth H2]
Photosystem II reaction center protein H
BA [auth i1],
H [auth I1],
SB [auth i2],
WA [auth I2]
Photosystem II reaction center protein I-
CA [auth j1],
I [auth J1],
TB [auth j2],
XA [auth J2]
Photosystem II reaction center protein J-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth C1],
NB [auth c2],
RA [auth C2],
W [auth c1]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C [auth C1],
NB [auth c2],
RA [auth C2],
W [auth c1]
IPR000932Photosystem antenna protein-likeFamily
C [auth C1],
NB [auth c2],
RA [auth C2],
W [auth c1]
IPR005869Photosystem II CP43 reaction centre proteinFamily
C [auth C1],
NB [auth c2],
RA [auth C2],
W [auth c1]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
A [auth A1],
LB [auth a2],
PA [auth A2],
U [auth a1]
IPR005867Photosystem II protein D1Family
A [auth A1],
LB [auth a2],
PA [auth A2],
U [auth a1]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth A1],
LB [auth a2],
PA [auth A2],
U [auth a1]
IPR000484Photosynthetic reaction centre, L/MFamily
DA [auth k1],
J [auth K1],
UB [auth k2],
YA [auth K2]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
DA [auth k1],
J [auth K1],
UB [auth k2],
YA [auth K2]
IPR003687Photosystem II PsbKFamily
EA [auth l1],
K [auth L1],
VB [auth l2],
ZA [auth L2]
IPR003372Photosystem II PsbLFamily
EA [auth l1],
K [auth L1],
VB [auth l2],
ZA [auth L2]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
CB [auth T2],
HA [auth t1],
N [auth T1],
YB [auth t2]
IPR001743Photosystem II PsbTFamily
CB [auth T2],
HA [auth t1],
N [auth T1],
YB [auth t2]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
DB [auth U2],
IA [auth u1],
O [auth U1],
ZB [auth u2]
IPR006311Twin-arginine translocation pathway, signal sequenceConserved Site
DB [auth U2],
IA [auth u1],
O [auth U1],
ZB [auth u2]
IPR010527Photosystem II PsbU, oxygen evolving complexFamily
AC [auth v2],
EB [auth V2],
JA [auth v1],
P [auth V1]
IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
AC [auth v2],
EB [auth V2],
JA [auth v1],
P [auth V1]
IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
AC [auth v2],
EB [auth V2],
JA [auth v1],
P [auth V1]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
AC [auth v2],
EB [auth V2],
JA [auth v1],
P [auth V1]
IPR009056Cytochrome c-like domainDomain
AC [auth v2],
EB [auth V2],
JA [auth v1],
P [auth V1]
IPR029490Cytochrome c-550 domainDomain
BC [auth y2],
FB [auth Y2],
KA [auth y1],
Q [auth Y1]
IPR010284Photosystem II reaction center protein Ycf12Family
B [auth B1],
MB [auth b2],
QA [auth B2],
V [auth b1]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B [auth B1],
MB [auth b2],
QA [auth B2],
V [auth b1]
IPR000932Photosystem antenna protein-likeFamily
B [auth B1],
MB [auth b2],
QA [auth B2],
V [auth b1]
IPR017486Photosystem II CP47 reaction centre proteinFamily
JB [auth Q2],
OA [auth q1]
IPR008797Oxygen-evolving enhancer protein 3Family
JB [auth Q2],
OA [auth q1]
IPR023222PsbQ-like domain superfamilyHomologous Superfamily
D [auth D1],
OB [auth d2],
SA [auth D2],
X [auth d1]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D [auth D1],
OB [auth d2],
SA [auth D2],
X [auth d1]
IPR000484Photosynthetic reaction centre, L/MFamily
D [auth D1],
OB [auth d2],
SA [auth D2],
X [auth d1]
IPR005868Photosystem II D2 proteinFamily
E [auth E1],
PB [auth e2],
TA [auth E2],
Y [auth e1]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
E [auth E1],
PB [auth e2],
TA [auth E2],
Y [auth e1]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E [auth E1],
PB [auth e2],
TA [auth E2],
Y [auth e1]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E [auth E1],
PB [auth e2],
TA [auth E2],
Y [auth e1]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E [auth E1],
PB [auth e2],
TA [auth E2],
Y [auth e1]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F [auth F1],
QB [auth f2],
UA [auth F2],
Z [auth f1]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
F [auth F1],
QB [auth f2],
UA [auth F2],
Z [auth f1]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
F [auth F1],
QB [auth f2],
UA [auth F2],
Z [auth f1]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
AA [auth h1],
G [auth H1],
RB [auth h2],
VA [auth H2]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
AA [auth h1],
G [auth H1],
RB [auth h2],
VA [auth H2]
IPR001056Photosystem II reaction centre protein HFamily
BA [auth i1],
H [auth I1],
SB [auth i2],
WA [auth I2]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
BA [auth i1],
H [auth I1],
SB [auth i2],
WA [auth I2]
IPR003686Photosystem II PsbIFamily
CA [auth j1],
I [auth J1],
TB [auth j2],
XA [auth J2]
IPR002682Photosystem II PsbJFamily
CA [auth j1],
I [auth J1],
TB [auth j2],
XA [auth J2]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily