Crystal structure of the 500 kD yeast acetyl-CoA carboxylase holoenzyme dimer
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8043361 | 3000094 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PreATP-grasp domain | 8043359 | 3001680 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ClpP/crotonase | 8035309 | 3000033 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ClpP/crotonase | 8035307 | 3000033 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Rudiment single hybrid motif | 8043358 | 3001910 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ClpP/crotonase | 8035307 | 3000033 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Rudiment single hybrid motif | 8043358 | 3001910 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ClpP/crotonase | 8035309 | 3000033 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8043361 | 3000094 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PreATP-grasp domain | 8043359 | 3001680 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ACC_central_1st_1 | e5cslA5 | A: alpha bundles | X: Bromodomain-like | H: Four-helical bundle in acetyl-CoA carboxylase (From Topology) | T: Four-helical bundle in acetyl-CoA carboxylase | F: ACC_central_1st_1 | ECOD (1.6) |
A | ACC_central_1st | e5cslA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Helical domain in acetyl-CoA carboxylase (From Topology) | T: Helical domain in acetyl-CoA carboxylase | F: ACC_central_1st | ECOD (1.6) |
A | KOG0368 | e5cslA6 | A: a+b two layers | X: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology) | H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related | T: Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | F: KOG0368 | ECOD (1.6) |
A | ATP-grasp | e5cslA9 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
A | Biotin_carb_C | e5cslA11 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: Biotin_carb_C | ECOD (1.6) |
A | Biotin_lipoyl | e5cslA4 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: Biotin_lipoyl | ECOD (1.6) |
A | Biotin_carb_N | e5cslA10 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: Biotin_carb_N | ECOD (1.6) |
A | ACC_central_2nd | e5cslA2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Acetyl-CoA carboxylase AC4 and AC5 domains (From Topology) | T: Acetyl-CoA carboxylase AC4 and AC5 domains | F: ACC_central_2nd | ECOD (1.6) |
A | Carboxyl_trans_C | e5cslA7 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Carboxyl_trans_C | ECOD (1.6) |
B | ACC_central_1st_1 | e5cslB3 | A: alpha bundles | X: Bromodomain-like | H: Four-helical bundle in acetyl-CoA carboxylase (From Topology) | T: Four-helical bundle in acetyl-CoA carboxylase | F: ACC_central_1st_1 | ECOD (1.6) |
B | ACC_central_1st | e5cslB4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Helical domain in acetyl-CoA carboxylase (From Topology) | T: Helical domain in acetyl-CoA carboxylase | F: ACC_central_1st | ECOD (1.6) |
B | KOG0368 | e5cslB1 | A: a+b two layers | X: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology) | H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related | T: Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | F: KOG0368 | ECOD (1.6) |
B | ATP-grasp | e5cslB9 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
B | Biotin_carb_C | e5cslB11 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: Biotin_carb_C | ECOD (1.6) |
B | Biotin_lipoyl | e5cslB2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: Biotin_lipoyl | ECOD (1.6) |
B | Biotin_carb_N | e5cslB10 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: Biotin_carb_N | ECOD (1.6) |
B | ACC_central_2nd | e5cslB5 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Acetyl-CoA carboxylase AC4 and AC5 domains (From Topology) | T: Acetyl-CoA carboxylase AC4 and AC5 domains | F: ACC_central_2nd | ECOD (1.6) |
B | Carboxyl_trans_C | e5cslB7 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: Carboxyl_trans_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.20 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (utative) | |
A | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (utative) |
B | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (utative) |
B | 2.40.460.10 | Mainly Beta | Beta Barrel | ClpP/crotonase fold | Biotin dependent carboxylase carboxyltransferase | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21385 | Acetyl-CoA carboxylase, BT domain (ACCA_BT) | Acetyl-CoA carboxylase, BT domain | This is the BC-CT interaction domain (BT) which is between the BC (biotin carboxylase, which catalyses the MgATP-dependent carboxylation of N1' atom of biotin) and BCCP (biotin carboxyl carrier protein) domains of Acetyl-CoA carboxylase. This domain ... | Domain | |
PF00364 | Biotin-requiring enzyme (Biotin_lipoyl) | Biotin-requiring enzyme | This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. | Domain | |
PF02786 | Carbamoyl-phosphate synthase L chain, ATP binding domain (CPSase_L_D2) | Carbamoyl-phosphate synthase L chain, ATP binding domain | Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The c ... | Domain | |
PF08326 | Acetyl-CoA carboxylase, central region (ACC_central) | Acetyl-CoA carboxylase, central region | - | Family | |
PF02785 | Biotin carboxylase C-terminal domain (Biotin_carb_C) | Biotin carboxylase C-terminal domain | Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are in ... | Domain | |
PF00289 | Biotin carboxylase, N-terminal domain (Biotin_carb_N) | Biotin carboxylase, N-terminal domain | This domain is structurally related to the PreATP-grasp domain. The family contains the N-terminus of biotin carboxylase enzymes [1,3], and propionyl-CoA carboxylase A chain [2]. | Domain | |
PF01039 | Carboxyl transferase domain (Carboxyl_trans) | Carboxyl transferase domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011763 | Acetyl-coenzyme A carboxyltransferase, C-terminal | Domain | |
IPR029045 | ClpP/crotonase-like domain superfamily | Homologous Superfamily | |
IPR011762 | Acetyl-coenzyme A carboxyltransferase, N-terminal | Domain | |
IPR049074 | Acetyl-CoA carboxylase, BT domain | Domain | |
IPR011764 | Biotin carboxylation domain | Domain | |
IPR005479 | Carbamoyl phosphate synthase, ATP-binding domain | Domain | |
IPR034733 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta | Domain | |
IPR049076 | Acetyl-CoA carboxylase | Family | |
IPR011054 | Rudiment single hybrid motif | Homologous Superfamily | |
IPR013537 | Acetyl-CoA carboxylase, central domain | Domain | |
IPR011053 | Single hybrid motif | Homologous Superfamily | |
IPR001882 | Biotin-binding site | Binding Site | |
IPR000089 | Biotin/lipoyl attachment | Domain | |
IPR005481 | Biotin carboxylase-like, N-terminal domain | Domain | |
IPR011761 | ATP-grasp fold | Domain | |
IPR013815 | ATP-grasp fold, subdomain 1 | Homologous Superfamily | |
IPR005482 | Biotin carboxylase, C-terminal | Domain | |
IPR016185 | Pre-ATP-grasp domain superfamily | Homologous Superfamily |