5DED
Crystal structure of the small alarmone synthethase 1 from Bacillus subtilis bound to its product pppGpp
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | Nucleotidyltransferase-like | 8058788 | 3000129 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2 Family | RelA/SpoT domain | 8058787 | 4001424 | SCOP2 (2022-06-29) |
B [auth A] | SCOP2 Superfamily | Nucleotidyltransferase-like | 8058788 | 3000129 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Nucleotidyltransferase-like | 8058788 | 3000129 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Nucleotidyltransferase-like | 8058788 | 3000129 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Nucleotidyltransferase-like | 8058788 | 3000129 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Nucleotidyltransferase-like | 8058788 | 3000129 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Nucleotidyltransferase-like | 8058788 | 3000129 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Nucleotidyltransferase-like | 8058788 | 3000129 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | RelA_SpoT | e5dedD1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RelA_SpoT | ECOD (1.6) |
B [auth A] | RelA_SpoT | e5dedA1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RelA_SpoT | ECOD (1.6) |
E | RelA_SpoT | e5dedE1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RelA_SpoT | ECOD (1.6) |
G | RelA_SpoT | e5dedG1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RelA_SpoT | ECOD (1.6) |
H | RelA_SpoT | e5dedH1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RelA_SpoT | ECOD (1.6) |
C [auth B] | RelA_SpoT | e5dedB1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RelA_SpoT | ECOD (1.6) |
D [auth C] | RelA_SpoT | e5dedC1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RelA_SpoT | ECOD (1.6) |
F | RelA_SpoT | e5dedF1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: RelA_SpoT | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04607 | Region found in RelA / SpoT proteins (RelA_SpoT) | Region found in RelA / SpoT proteins | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR052366 | GTP Pyrophosphokinase | Family | |
IPR043519 | Nucleotidyltransferase superfamily | Homologous Superfamily | |
IPR007685 | RelA/SpoT | Domain |