5JZT | pdb_00005jzt

Cryo-EM structure of aerolysin pore in LMNG micelle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyAerolisin/ETX/LSL pore-forming domain-like 8035143 3000278 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyC-type lectin-like 8035141 3001261 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CAerolysine5jztC1 A: beta complex topologyX: Aerolysin family of pore-forming toxins (From Topology)H: Aerolysin family of pore-forming toxins (From Topology)T: Aerolysin family of pore-forming toxinsF: AerolysinECOD (1.6)
CAPTe5jztC2 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: APTECOD (1.6)
DAerolysine5jztD2 A: beta complex topologyX: Aerolysin family of pore-forming toxins (From Topology)H: Aerolysin family of pore-forming toxins (From Topology)T: Aerolysin family of pore-forming toxinsF: AerolysinECOD (1.6)
DAPTe5jztD1 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: APTECOD (1.6)
FAerolysine5jztF1 A: beta complex topologyX: Aerolysin family of pore-forming toxins (From Topology)H: Aerolysin family of pore-forming toxins (From Topology)T: Aerolysin family of pore-forming toxinsF: AerolysinECOD (1.6)
FAPTe5jztF2 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: APTECOD (1.6)
AAerolysine5jztA1 A: beta complex topologyX: Aerolysin family of pore-forming toxins (From Topology)H: Aerolysin family of pore-forming toxins (From Topology)T: Aerolysin family of pore-forming toxinsF: AerolysinECOD (1.6)
AAPTe5jztA2 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: APTECOD (1.6)
BAerolysine5jztB2 A: beta complex topologyX: Aerolysin family of pore-forming toxins (From Topology)H: Aerolysin family of pore-forming toxins (From Topology)T: Aerolysin family of pore-forming toxinsF: AerolysinECOD (1.6)
BAPTe5jztB1 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: APTECOD (1.6)
EAerolysine5jztE1 A: beta complex topologyX: Aerolysin family of pore-forming toxins (From Topology)H: Aerolysin family of pore-forming toxins (From Topology)T: Aerolysin family of pore-forming toxinsF: AerolysinECOD (1.6)
EAPTe5jztE2 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: APTECOD (1.6)
GAerolysine5jztG2 A: beta complex topologyX: Aerolysin family of pore-forming toxins (From Topology)H: Aerolysin family of pore-forming toxins (From Topology)T: Aerolysin family of pore-forming toxinsF: AerolysinECOD (1.6)
GAPTe5jztG1 A: a+b complex topologyX: C-type lectin-like (From Homology)H: C-type lectin-likeT: C-type lectin-likeF: APTECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01117Aerolysin toxin (Aerolysin)Aerolysin toxinThis family represents the pore forming lobe of aerolysin. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR055267Aerolysin-like, C-terminalDomain
A, B, C, D, E
IPR005831Aerolysin/haemolysin toxin, conserved siteConserved Site
A, B, C, D, E
IPR005830AerolysinFamily
A, B, C, D, E
IPR005138Aerolysin/Pertussis toxin domainDomain
A, B, C, D, E
IPR016187C-type lectin foldHomologous Superfamily
A, B, C, D, E
IPR037015Aerolysin/Pertussis toxin (APT), N-terminal domain superfamilyHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM