Cryo EM structure of the E. coli disaggregase ClpB (BAP form, DWB mutant), in the ATPgammaS state, bound to the model substrate casein
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039884 | 3002019 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039884 | 3002019 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039884 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039884 | 3002019 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039884 | 3002019 | SCOP2B (2022-06-29) |
F [auth A] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039884 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | ClpB_D2-small | e5ofoC2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
A [auth C] | chaperone_ClpB | e5ofoC3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
A [auth C] | Sigma54_activat | e5ofoC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
B [auth F] | ClpB_D2-small | e5ofoF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
B [auth F] | chaperone_ClpB | e5ofoF2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
B [auth F] | Sigma54_activat | e5ofoF4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
C [auth E] | ClpB_D2-small | e5ofoE3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
C [auth E] | chaperone_ClpB | e5ofoE2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
C [auth E] | Sigma54_activat | e5ofoE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
D | ClpB_D2-small | e5ofoD2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
D | chaperone_ClpB | e5ofoD4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
D | Sigma54_activat | e5ofoD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
E [auth B] | ClpB_D2-small | e5ofoB3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
E [auth B] | chaperone_ClpB | e5ofoB2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
E [auth B] | Sigma54_activat | e5ofoB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
F [auth A] | ClpB_D2-small | e5ofoA4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: ClpB_D2-small | ECOD (1.6) |
F [auth A] | chaperone_ClpB | e5ofoA3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: chaperone_ClpB | ECOD (1.6) |
F [auth A] | Sigma54_activat | e5ofoA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10431 | C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) | C-terminal, D2-small domain, of ClpB protein | This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, Pfam:PF00004) it lacks the long coiled-coil insertion, and instead of helix C4 ... | Domain | |
PF17871 | AAA lid domain (AAA_lid_9) | AAA lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF07724 | AAA domain (Cdc48 subfamily) (AAA_2) | AAA domain (Cdc48 subfamily) | This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. | Domain |